Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001122-TA|BGIBMGA001122-PA|IPR002130|Peptidyl-prolyl
cis-trans isomerase, cyclophilin type
(262 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu... 100 9e-22
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 95 3e-20
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 93 1e-19
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 93 1e-19
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 93 2e-19
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 90 1e-18
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu... 87 9e-18
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 87 1e-17
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 85 5e-17
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 85 6e-17
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 83 1e-16
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 83 2e-16
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 83 2e-16
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 82 4e-16
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 70 2e-12
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 67 1e-11
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 65 4e-11
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 63 2e-10
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc... 56 2e-08
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 54 7e-08
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 47 1e-05
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 45 5e-05
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 40 0.001
At2g29060.1 68415.m03532 scarecrow transcription factor family p... 31 0.59
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 31 1.0
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc... 31 1.0
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc... 31 1.0
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc... 31 1.0
At3g07690.1 68416.m00923 NAD-dependent glycerol-3-phosphate dehy... 30 1.4
At5g55050.1 68418.m06861 GDSL-motif lipase/hydrolase family prot... 29 2.4
At3g19780.1 68416.m02504 expressed protein 29 3.2
At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase cyc... 29 4.2
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta... 28 7.3
>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Catharanthus roseus] SWISS-PROT:Q39613
Length = 176
Score = 100 bits (240), Expect = 9e-22
Identities = 61/169 (36%), Positives = 90/169 (53%), Gaps = 10/169 (5%)
Query: 74 KVSMEVWVVGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP-FGHA-----YAGTRFFRI 127
KV ++ ++G K G+V +ELF D+ P+T F +L G+ G A Y G+ F RI
Sbjct: 5 KVFFDI-LIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRI 63
Query: 128 VPDLYCRGGDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNI 187
+P C+GGD + NG G G E ++LKHT PG+LSM S N +QF I
Sbjct: 64 IPGFMCQGGDFTRGNGTGGESIYGSK--FEDENFKLKHTGPGILSMANSGPNTNGSQFFI 121
Query: 188 IFKPLPQFDGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
+ DGKHVVFG+++ G ++ + +G +G + VI +CG
Sbjct: 122 CTEKTSWLDGKHVVFGKVVDG-YNVVKAMEDVGSDMGNPSERVVIEDCG 169
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 95.5 bits (227), Expect = 3e-20
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 9/161 (5%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP-FGHA-----YAGTRFFRIVPDLYCRG 135
+GG+ GK+ +EL+ D PKT + F +L G+ G + + G+ F R++P+ C+G
Sbjct: 13 IGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQG 72
Query: 136 GDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQF 195
GD K NG G G E + KHT PG+LSM + N +QF I
Sbjct: 73 GDFTKGNGTGGESIYGAK--FEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWL 130
Query: 196 DGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
DGKHVVFG+++ G ++ I +G G T VI +CG
Sbjct: 131 DGKHVVFGQVVEG-LDVVKAIEKIGSSSGKPTKPVVIADCG 170
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 93.5 bits (222), Expect = 1e-19
Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 10/162 (6%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP-FGHA------YAGTRFFRIVPDLYCR 134
+GG + ++ IELF D+VPKT + F +L G+ G + + G+ F R++ +
Sbjct: 15 IGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSSFHRVIKGFMAQ 74
Query: 135 GGDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQ 194
GGD NG G G E +RL H GVLSM N +QF I+FK P
Sbjct: 75 GGDFSNGNGTGGESIYGGK--FSDENFRLDHDGAGVLSMANCGPNTNGSQFFILFKRQPH 132
Query: 195 FDGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
DGKHVVFG+++ G A ++++ +G G TS I +CG
Sbjct: 133 LDGKHVVFGKVVEGMA-VIKKMELVGTSDGKPTSPVKIIDCG 173
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 93.5 bits (222), Expect = 1e-19
Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 10/162 (6%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP-FGHA------YAGTRFFRIVPDLYCR 134
+GG + ++ IELF D+VPKT + F +L G+ G + + G+ F R++ +
Sbjct: 15 IGGDPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSSFHRVIKGFMAQ 74
Query: 135 GGDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQ 194
GGD NG G G E +RL H GVLSM N +QF I+FK P
Sbjct: 75 GGDFSNGNGTGGESIYGGK--FSDENFRLDHDGAGVLSMANCGPNTNGSQFFILFKRQPH 132
Query: 195 FDGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
DGKHVVFG+++ G A ++++ +G G TS I +CG
Sbjct: 133 LDGKHVVFGKVVEGMA-VIKKMELVGTSDGKPTSPVKIIDCG 173
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 93.1 bits (221), Expect = 2e-19
Identities = 70/200 (35%), Positives = 94/200 (47%), Gaps = 10/200 (5%)
Query: 43 ASLPFILFKTEKIDRDIRDPSFDRPLNVYRTKVSMEVWVVGGSKIGKVTIELFNDIVPKT 102
A FIL T + I L KV +V + G G+V I LF VPKT
Sbjct: 2 AKASFILLGTLFLFGAIASIQAKEDLKEVTHKVYFDV-EIDGKSAGRVVIGLFGKAVPKT 60
Query: 103 CQLFLSLVRGDP-FGHA-----YAGTRFFRIVPDLYCRGGDVIKDNGFGCYLPEGQTEPM 156
+ F +L G+ G + Y G++F RI+P +GGD NG G GQ
Sbjct: 61 AENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQK--F 118
Query: 157 GVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFGRIIGGPAQALERI 216
E ++LKHT PGVLSM S ++ +QF I DG+HVVFG+++ G + +I
Sbjct: 119 ADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQG-MDVVYKI 177
Query: 217 SALGLPLGTTTSDCVIRNCG 236
A G GT S VI + G
Sbjct: 178 EAEGKQSGTPKSKVVIADSG 197
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 90.2 bits (214), Expect = 1e-18
Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP-FGHA-----YAGTRFFRIVPDLYCRG 135
VGG G++ +EL+ D P+T + F +L G+ G Y G+ F R++P C+G
Sbjct: 13 VGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQG 72
Query: 136 GDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQF 195
GD NG G G E + KHT PG+LSM + N +QF I +
Sbjct: 73 GDFTAGNGTGGESIYGSK--FKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWL 130
Query: 196 DGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
DGKHVVFG+++ G + I +G G T+ VI +CG
Sbjct: 131 DGKHVVFGQVVEG-LNVVRDIEKVGSDSGRTSKPVVIADCG 170
>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Homo sapiens]
gi|3647230|gb|AAC60793
Length = 199
Score = 87.4 bits (207), Expect = 9e-18
Identities = 60/178 (33%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 66 RPLNVYRTKVSMEVWVVGGSKIGKVTIELFNDIVPKTCQLFLSLVRGD------PFGHAY 119
RP N V +V +GG G++ +ELF DI PKT + F G+ P G Y
Sbjct: 25 RPPNPKNPVVFFDV-SIGGIPAGRIKMELFADIAPKTAENFRQFCTGELRKAGKPLG--Y 81
Query: 120 AGTRFFRIVPDLYCRGGDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDN 179
+F R++ D + GD +K++G GC G E + KHT PG+LSM S N
Sbjct: 82 KECQFHRVIKDFMVQSGDFLKNDGSGCMSIYGHK--FEDENFTAKHTGPGLLSMANSGPN 139
Query: 180 EVCAQFNIIFKPLPQFDGKHVVFGRIIGGPAQALERISALGL-PLGTTTSDCVIRNCG 236
QF I D KHVVFGR++G + +I + + P VI CG
Sbjct: 140 TNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVMRKIENVAIGPNNRPKLAVVITECG 197
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 87.0 bits (206), Expect = 1e-17
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP-FGHA-----YAGTRFFRIVPDLYCRG 135
+ G G++ +EL+ D P+T + F +L G+ G + G++F R++P+ C+G
Sbjct: 12 IDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQG 71
Query: 136 GDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQF 195
GD NG G G E + KHT PG+LSM + N +QF I
Sbjct: 72 GDFTAGNGTGGESIYGSK--FEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWL 129
Query: 196 DGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
DGKHVVFG+++ G ++ I +G G T V+ +CG
Sbjct: 130 DGKHVVFGQVVEG-LDVVKAIEKVGSSSGKPTKPVVVADCG 169
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 85.0 bits (201), Expect = 5e-17
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKD 141
+GG G++ + LF ++VPKT + F +L G+ + Y G+ F RI+ D +GGD +
Sbjct: 103 IGGEVAGRIVMGLFGEVVPKTVENFRALCTGEK-KYGYKGSSFHRIIKDFMIQGGDFTEG 161
Query: 142 NGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVV 201
NG G G E + LKHT PG+LSM + N +QF I D KHVV
Sbjct: 162 NGTGGISIYGAK--FEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVV 219
Query: 202 FGRIIGG 208
FG++I G
Sbjct: 220 FGQVIEG 226
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 84.6 bits (200), Expect = 6e-17
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 16/207 (7%)
Query: 39 LILGASLPFILFK-TEKIDRDIRDPSFDRPLNVYRTK---VSMEVWV---VGGSKIGKVT 91
++L +L I K T+ D + + D LN V+ +V+ + GS G++
Sbjct: 17 VVLFVTLALIQIKLTDVADPSVNEKILDAKLNQVGEDLEGVTHKVYFDIQINGSPAGRIL 76
Query: 92 IELFNDIVPKTCQLFLSLVRGDP-FGHA-----YAGTRFFRIVPDLYCRGGDVIKDNGFG 145
I LF +IVPKT + F SL G+ G+ + G+ F RI+P +GGD + +G G
Sbjct: 77 IGLFGNIVPKTAENFRSLCTGEKGVGNMGKPLYFKGSSFHRIIPGFMIQGGDFTRGDGRG 136
Query: 146 CYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFGRI 205
G + E ++LKHT PG LSM S + +QF I DG HVVFG++
Sbjct: 137 GESIYG--DKFADENFKLKHTGPGFLSMANSGPDSNGSQFFITTVTTSWLDGHHVVFGKV 194
Query: 206 IGGPAQALERISALGLPLGTTTSDCVI 232
+ G + + +I A G G ++ +I
Sbjct: 195 LSG-MEVVRKIEAQGQDSGVPKANVII 220
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 83.4 bits (197), Expect = 1e-16
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDPF----GHA--YAGTRFFRIVPDLYCRG 135
+ G G++ + LF VPKT + F +L G+ G A Y G+ F RI+P +G
Sbjct: 43 IDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQG 102
Query: 136 GDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQF 195
GD NG G G E E ++LKHT PG LSM + + +QF I
Sbjct: 103 GDFTHGNGMGGESIYG--EKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWL 160
Query: 196 DGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
DG+HVVFG+++ G + ++ A G GT S VI + G
Sbjct: 161 DGRHVVFGKVVTG-MDVVYKVEAEGNQSGTPKSKVVIVDSG 200
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 82.6 bits (195), Expect = 2e-16
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 84 GSKIGKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKDNG 143
G G++ I L+ D VP+T + F +L G+ G Y G+ F R++ D +GGD K NG
Sbjct: 103 GKLAGRIVIGLYGDDVPQTVENFRALCTGEK-GFGYKGSTFHRVIRDFMIQGGDFEKGNG 161
Query: 144 FGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFG 203
G G+T E ++L H PGVLSM + N +QF I DG+HVVFG
Sbjct: 162 TGGKSVYGRT--FKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFG 219
Query: 204 RIIGG 208
++I G
Sbjct: 220 QVIEG 224
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 82.6 bits (195), Expect = 2e-16
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP----FGHA--YAGTRFFRIVPDLYCRG 135
+ G+ IG++ +ELF D P T + F +L G+ G + G+ F R++P C+G
Sbjct: 12 LSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQG 71
Query: 136 GDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQF 195
GD NG G G E + KHT G+LSM S N +QF I
Sbjct: 72 GDFTAKNGTGGESIYGAK--FKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWL 129
Query: 196 DGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
DGKHVVFG+++ G ++ I +G G T+ I +CG
Sbjct: 130 DGKHVVFGQVVKG-LDVVKAIEKVGSDSGKTSKVVTITDCG 169
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 81.8 bits (193), Expect = 4e-16
Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 72 RTKVSMEVWVVGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP-FGHA------YAGTRF 124
R+K M++ +GG G++ IEL++D+VPKT + F L G+ G Y G RF
Sbjct: 3 RSKCFMDI-SIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRF 61
Query: 125 FRIVPDLYCRGGDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQ 184
R++ +GGD+ ++G G G E + LKH G+LSM S N +Q
Sbjct: 62 HRVIKGFMIQGGDISANDGTGGESIYGLK--FDDENFELKHERKGMLSMANSGPNTNGSQ 119
Query: 185 FNIIFKPLPQFDGKHVVFGRIIG--GPAQALERISALGLPLGTTTSDCVIRNCG 236
F I DGKHVVFGR+ G +++E +S + D VI +CG
Sbjct: 120 FFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSI--EEQSCPSQDVVIHDCG 171
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 69.7 bits (163), Expect = 2e-12
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 74 KVSMEVWVVGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDP-FGHA------YAGTRFFR 126
+V M+V + G + ELF ++ PKT + F +L G+ G Y G+ F R
Sbjct: 8 QVFMDV-SIDGDPAETMVFELFPEVAPKTSENFRALCTGEKGIGPRSGKPLHYKGSFFHR 66
Query: 127 IVPDLYCRGGDVIKDNGF-GCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQF 185
I+ + GD + NG G + G+ E +L+H G+LSM ++ ++ + F
Sbjct: 67 IMKGSSAQAGDFVNRNGTAGESIYAGKFPD---ESPKLRHEETGLLSMSIADRDKFGSHF 123
Query: 186 NIIFKPLPQFDGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCGWFTRSGQYR 245
+I F+P Q D +VVFG++I G + L++I +G G T I CG ++ +
Sbjct: 124 HITFRPNQQLDRNNVVFGKLIQG-KEILKKIERVGDEEGKPTVSVKIIRCGEYSGDKKKS 182
Query: 246 EGNQN 250
+G +N
Sbjct: 183 DGKKN 187
>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
isomerase, cyclophilin-type
Length = 164
Score = 67.3 bits (157), Expect = 1e-11
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 85 SKIGKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKDNGF 144
+ +G T+E++ P+TC+ FL L R G+ Y F RIV D +GGD
Sbjct: 16 TSMGPFTVEMYYKHSPRTCRNFLELSRR---GY-YDNVLFHRIVKDFIVQGGDPTGTGRG 71
Query: 145 GCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFGR 204
G + + E + LKHT G+LSM + N +QF I P P DGKH +FGR
Sbjct: 72 GESIYGSKFEDEINK--ELKHTGAGILSMANAGPNTNGSQFFITLAPQPSLDGKHTIFGR 129
Query: 205 IIGGPAQALERISAL 219
+ G + ++R+ ++
Sbjct: 130 VCRG-MEVIKRLGSV 143
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 65.3 bits (152), Expect = 4e-11
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDPFGHA------YAGTRFFRIVPDLYCRG 135
+ G ++G++ I L+ +VPKT + F +L G+ + Y GT F RI+ +G
Sbjct: 55 IDGQRLGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPLHYKGTPFHRIISGFVIQG 114
Query: 136 GDVIKDNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQF 195
GD+I +G G T P E ++++H+ G+++M + + +QF I
Sbjct: 115 GDIIHGDGKSSDSIYGGTFPD--ENFKIQHSHAGMVAMANTGPDSNGSQFFITTVKASWL 172
Query: 196 DGKHVVFGRIIGGPAQALERISALGLPLGTTTSDCVIRNCG 236
+G+HVV G++I G G G VI + G
Sbjct: 173 EGEHVVLGKVIQGMDNVFAIEGGAGTYSGKPRKKVVIADSG 213
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 63.3 bits (147), Expect = 2e-10
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 82 VGGSKIGKVTIELFNDIVPKTCQLFLSLVRGD-PFGHA-----YAGTRFFRIVPDLYCRG 135
V G G++ IELF D+ P+T + F L G+ G Y G+ F IVPDL G
Sbjct: 12 VDGKPAGRIVIELFADLTPRTAENFRGLCTGERGIGKCGKPIHYKGSTFDHIVPDLMWCG 71
Query: 136 GDVIKDNGFGCYLPEGQTEPMGVECYRLKH-TVPGVLSMVVSSDNEVCAQFNIIFKPLP- 193
GD+I +N +E + E + L H PG++SM S+ +QF I K
Sbjct: 72 GDIIFEN------EPIHSEELDDEYFILNHEDGPGIISMADSNG----SQFQIHMKDYGL 121
Query: 194 QFDGKHVVFGRIIGG--PAQALERISALGLPLGTTTSDCVIRNCG 236
Q DG HVV G+++ G + +E+ + T + VI +CG
Sbjct: 122 QVDGDHVVIGKVVEGLDLMRNIEK-EVITTTTRTPSKPVVIADCG 165
>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 160
Score = 56.0 bits (129), Expect = 2e-08
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 85 SKIGKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKDNGF 144
+ +G + E+F D VPK+ + FL+L G+ Y GT F R + +GGD K G
Sbjct: 7 TNLGDIKCEIFCDEVPKSAENFLALCAS---GY-YDGTIFHRNIKGFMIQGGDP-KGTGK 61
Query: 145 GCYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFGR 204
G G+ + LKH G+LSM S N +QF I + P +G + +FG+
Sbjct: 62 GGTSIWGKKFNDEIRD-SLKHNARGMLSMANSGPNTNGSQFFITYAKQPHLNGLYTIFGK 120
Query: 205 IIGG 208
+I G
Sbjct: 121 VIHG 124
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 54.4 bits (125), Expect = 7e-08
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 88 GKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKDN--GFG 145
G + IEL DI P+ C+ F++L G+ Y G F R + + +GGD G
Sbjct: 353 GDLNIELHCDIAPRACENFITLCER---GY-YNGVAFHRSIRNFMIQGGDPTGTGKGGES 408
Query: 146 CYLPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFGRI 205
+ + EP +L H+ GV+SM S + +QF +++K + KH VFG +
Sbjct: 409 IWGKPFKDEPNS----KLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGV 464
Query: 206 IGGPA 210
+GG A
Sbjct: 465 VGGLA 469
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 47.2 bits (107), Expect = 1e-05
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 81 VVGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIK 140
V+ + +G + ++L+ + PKT + F + R G+ Y F R++ + GD +
Sbjct: 478 VIMHTTLGDIHMKLYPEECPKTVENFTTHCRN---GY-YDNHLFHRVIRGFMIQTGDPLG 533
Query: 141 DNGFGCYLPEGQTEPMGVECYR-LKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKH 199
D G + + E E ++ L+H P LSM + N +QF I P D KH
Sbjct: 534 DGTGGQSIWGREFED---EFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKH 590
Query: 200 VVFGRIIGG--PAQALERI 216
VFGR++ G Q +E++
Sbjct: 591 TVFGRVVKGMDVVQGIEKV 609
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 45.2 bits (102), Expect = 5e-05
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 77 MEVWVVGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGG 136
M V +V + +G + I+L +D P TC+ FL L + Y G F + D + G
Sbjct: 1 MSVLIV--TSLGDIVIDLHSDKCPLTCKNFLKLCKIK----YYNGCLFHTVQKDFTAQTG 54
Query: 137 DVIKDNGFGC----YLPEGQTEPMGVECYR-LKHTVPGVLSMVVSSDNEVCAQFNIIFKP 191
D G +L Q E + LKH+ G ++M +N +QF +
Sbjct: 55 DPTGTGAGGDSIYKFLYGEQARFYKDEIHLDLKHSKTGTVAMASGGENLNASQFYFTLRD 114
Query: 192 -LPQFDGKHVVFGRIIGG 208
L DGKH VFG+I G
Sbjct: 115 DLDYLDGKHTVFGQIAEG 132
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 40.3 bits (90), Expect = 0.001
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 7/137 (5%)
Query: 81 VVGGSKIGKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIK 140
V+ + G + +EL+ PK+ + F+ L F + T F R++P +GGD
Sbjct: 15 VIVNTTHGPIDVELWPKEAPKSVRNFVQLCLEGYFDN----TIFHRVIPGFLVQGGDPTG 70
Query: 141 DNGFGCYLPEGQTEPMGVECYRLKHTVPGVLSMV-VSSDNEVCAQFNIIFKPLPQFDGKH 199
G + G R H G+++M SS N +QF D KH
Sbjct: 71 SGTGGDSIYGGVFADEFHSRLRFSHR--GIVAMANASSPNSNGSQFFFTLDKCDWLDKKH 128
Query: 200 VVFGRIIGGPAQALERI 216
+FG++ G L R+
Sbjct: 129 TIFGKVTGDSIYNLLRL 145
>At2g29060.1 68415.m03532 scarecrow transcription factor family
protein
Length = 1336
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 3 VNKELLKRINLIQRTGRSEQPLTKELEEHW--KETKHKLILGASL--PFILFKTEKIDRD 58
+ KEL++++ L+ +G + + + HW + K +++ G+S+ PF +
Sbjct: 646 LEKELVQKLKLMVESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIWVPFFFYVGRATRVL 705
Query: 59 IRDPSFDRPLN 69
I DP+F LN
Sbjct: 706 IMDPNFSESLN 716
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 30.7 bits (66), Expect = 1.0
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 87 IGKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYC---RGGDVIKDNG 143
+G+V + L+ VP T F + +Y T +I P Y R G +D
Sbjct: 85 LGRVVLGLYGRHVPITVSTFKRMCTSS--STSYKNTPVHKIFPGQYFLAGRQGGGRRDTA 142
Query: 144 FGCY----LPEGQTEPMGVECYRLKHTVPGVLSMVVSS---DNEVCAQ---FNIIFK--- 190
Y LP T+ + + + L H GV+S+ +S D+++ N+ F
Sbjct: 143 EVGYSLRDLPRN-TDVVNSKAFLLPHARAGVVSLCLSENDDDDDIRLDPDYRNVEFLITT 201
Query: 191 ---PLPQFDGKHVVFGRIIGG 208
P PQ DG ++VFG ++ G
Sbjct: 202 GPGPSPQLDGGNIVFGTVLEG 222
>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 30.7 bits (66), Expect = 1.0
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 88 GKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKDNGFGCY 147
G +T+ELF + P+ FL L + D F G F R++ + + G +
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQKDHF----KGMPFQRVIKNYLVQAGHSPSSIPVEEW 145
Query: 148 LPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFGRIIG 207
+G+ G KH +L + N + I P+P + + +VFGR++
Sbjct: 146 TAKGKLR--GRLHIGPKHEA-FMLGTPKNKGNNKDFELLITTAPIPDLNDQLIVFGRVLK 202
Query: 208 G 208
G
Sbjct: 203 G 203
>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 30.7 bits (66), Expect = 1.0
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 88 GKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKDNGFGCY 147
G +T+ELF + P+ FL L + D F G F R++ + + G +
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQKDHF----KGMPFQRVIKNYLVQAGHSPSSIPVEEW 145
Query: 148 LPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFGRIIG 207
+G+ G KH +L + N + I P+P + + +VFGR++
Sbjct: 146 TAKGKLR--GRLHIGPKHEA-FMLGTPKNKGNNKDFELLITTAPIPDLNDQLIVFGRVLK 202
Query: 208 G 208
G
Sbjct: 203 G 203
>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 30.7 bits (66), Expect = 1.0
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 88 GKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKDNGFGCY 147
G +T+ELF + P+ FL L + D F G F R++ + + G +
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQKDHF----KGMPFQRVIKNYLVQAGHSPSSIPVEEW 145
Query: 148 LPEGQTEPMGVECYRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQFDGKHVVFGRIIG 207
+G+ G KH +L + N + I P+P + + +VFGR++
Sbjct: 146 TAKGKLR--GRLHIGPKHEA-FMLGTPKNKGNNKDFELLITTAPIPDLNDQLIVFGRVLK 202
Query: 208 G 208
G
Sbjct: 203 G 203
>At3g07690.1 68416.m00923 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 455
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 71 YRTKVSMEVWVVGGSKIGKVTIELFNDIVPKTCQLFLSLVR 111
+R KVS+ +W GG I K T E +++ +L L+R
Sbjct: 59 FRGKVSVRIWRRGGRAIDKATAEHLFEVINSREELLRRLIR 99
>At5g55050.1 68418.m06861 GDSL-motif lipase/hydrolase family protein
similar to family II lipases EXL3 GI:15054386, EXL1
GI:15054382, EXL2 GI:15054384 from [Arabidopsis
thaliana]; contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 376
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 105 LFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGDVIKDNGFGCYLP 149
LFL L+R D F A T +P LY GD + D G YLP
Sbjct: 14 LFLGLLRFDSFPGLEAATGKLASIPGLYV-FGDSLVDAGNNNYLP 57
>At3g19780.1 68416.m02504 expressed protein
Length = 1014
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 14 IQRTGRSEQPLTKELEEHWKETKHKLILGASLPFILFKTEK 54
IQR + E P+ ELE+ W++ H+ L AS P ++ ++
Sbjct: 304 IQRFLKMENPIVTELEDDWQD--HESSLPASKPSVILFVDR 342
>At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 230
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 88 GKVTIELFNDIVPKTCQLFLSLVRGDPFGHAYAGTRFFRIVPDLYCRGGD 137
G VTIELF D P F+ + D + + G F R+V + GD
Sbjct: 87 GSVTIELFKDTAPNVVDQFMKFCQ-DGY---FKGFLFSRVVKHFVIQAGD 132
>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-1) nearly identical to
starch branching enzyme class II [Arabidopsis thaliana]
GI:619939
Length = 858
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 161 YRLKHTVPGVLSMVVSSDNEVCAQFNIIFKPLPQF--DGKH 199
YR+ +VPG +V+ SDN + FN + F DG+H
Sbjct: 775 YRIGCSVPGKYKIVLDSDNSLFGGFNRLDDSAEFFTSDGRH 815
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.142 0.440
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,769,454
Number of Sequences: 28952
Number of extensions: 306647
Number of successful extensions: 561
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 33
length of query: 262
length of database: 12,070,560
effective HSP length: 80
effective length of query: 182
effective length of database: 9,754,400
effective search space: 1775300800
effective search space used: 1775300800
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -