Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001121-TA|BGIBMGA001121-PA|IPR012680|Laminin G,
subdomain 2, IPR001007|von Willebrand factor, type C,
IPR006209|EGF-like, IPR013091|EGF calcium-binding,
IPR008985|Concanavalin A-like lectin/glucanase, IPR009030|Growth
factor, receptor, IPR009041|Proteinase inhibitor, PMP and SGCI,
IPR000152|Aspartic acid and asparagine hydroxylation site,
IPR013032|EGF-like region, IPR000742|EGF-like, type 3,
IPR001881|EGF-like calcium-binding, IPR001791|Laminin G,
IPR003129|Laminin G, Thrombospondin-type, N-terminal, IPR006552|VWC
out, IPR006210|EGF
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    31   0.50 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    31   0.50 
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    29   2.7  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   6.2  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          27   6.2  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 16/128 (12%)

Query: 235 PVECDRAECKNPVLHPGECCPTC----LRQCLLWGNLYEHGERFAPK-ECAECVCHDGNM 289
           P  C   + K+      E CP C     ++CL   ++ E+   +     C E +C+    
Sbjct: 649 PKSCHHPQVKHNCHPTSEPCPPCPYFVKKRCLCGKHILENQPCYRENVRCGE-LCNKLLS 707

Query: 290 QCTRVDPELACPRLPCDPPQQFSVPGECCK---FCPGV--DYCNMGHSCDENATCMNLNT 344
             T    +L  P   C+     S   EC K   +C  V    C+ GH CDE   C     
Sbjct: 708 CKTHFCEKLCHPDGECES----SCKKECGKRRMYCEHVCQSPCHAGHPCDERIPC-KAPL 762

Query: 345 KYTCKCNQ 352
           + +C+C +
Sbjct: 763 EVSCECGR 770


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 37/170 (21%), Positives = 57/170 (33%), Gaps = 18/170 (10%)

Query: 270 HGERFAPKECAEC----VC-HDGNMQCTRVDPELACPRLPCDPPQQFSVPGECCKFCP-- 322
           H  R    +C +C     C H  N  C  V    A   + C    +     + CK+C   
Sbjct: 144 HYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKVQPAAQYCKYCKNC 203

Query: 323 -GVDYCNMGHSCDE--NATCMNLNTKYTCKCNQGFQGDGLTCQDVDECQEAGGLHGHHCH 379
            G  YCN     D+  N +  + +    C+  +G   D   C+    C      + H C 
Sbjct: 204 MGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCI 263

Query: 380 SNTRCVNVVGGYVCQCLGGYTRKDKFNCVEVDECEGNTH-GCHADAVCTN 428
             +   N      C   G Y    +   + +  C    H  CH + + TN
Sbjct: 264 ERSTDCN------CPICGEYMFNSRERVIFL-SCSHPLHQRCHEEYIRTN 306


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 413 CEGNTHGCHADAVCTNTPGSYTCRCRDGYEGDGYTC---MHVDECTEGSHTCHHSARCVN 469
           C  +T+ C     CT    S  C   + ++ DG  C   + +  C  G  T   S +C  
Sbjct: 374 CRQSTNPCDKPEFCTGI--SSKCPVDENWD-DGRICQDSLGMGSCASGVCTSA-SRQCKK 429

Query: 470 IDGGFRCECFTENCELSC 487
           +       C +++C++SC
Sbjct: 430 LTNFSSLSCHSDSCKVSC 447


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 556 CPHCDARYHCRHQEMHHVTFRSGERWLYQCQICEC 590
           CP C   +H +  ++ H+   +GE+  ++C    C
Sbjct: 6   CPFCKRVFHRQEHQVRHIRSHTGEK-PFECSYPSC 39


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 556 CPHCDARYHCRHQEMHH--VTFRSGER 580
           CP CD+R+ C    + H  +T  SGER
Sbjct: 21  CPRCDSRFCCLECNLEHKRLTKCSGER 47


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,534
Number of Sequences: 5004
Number of extensions: 114343
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 8
length of query: 654
length of database: 2,362,478
effective HSP length: 77
effective length of query: 577
effective length of database: 1,977,170
effective search space: 1140827090
effective search space used: 1140827090
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 57 (27.1 bits)