GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001121-TA|BGIBMGA001121-PA|IPR012680|Laminin G,
subdomain 2, IPR001007|von Willebrand factor, type C,
IPR006209|EGF-like, IPR013091|EGF calcium-binding,
IPR008985|Concanavalin A-like lectin/glucanase, IPR009030|Growth
factor, receptor, IPR009041|Proteinase inhibitor, PMP and SGCI,
IPR000152|Aspartic acid and asparagine hydroxylation site,
IPR013032|EGF-like region, IPR000742|EGF-like, type 3,
IPR001881|EGF-like calcium-binding, IPR001791|Laminin G,
IPR003129|Laminin G, Thrombospondin-type, N-terminal, IPR006552|VWC
out, IPR006210|EGF
         (654 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    27   0.37 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.5  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 556 CPHCDARYHCRHQEMHHVTFRSGERWLYQCQICE 589
           CP C  R+   H    H+   +GE+  Y C  C+
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEK-PYHCSHCD 44


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 16/56 (28%)

Query: 435 CRCRDGYEGDGYTCMHVDECTE----------GSHTCHH-SARCVNIDGGF-RCEC 478
           C C+ GY+ D    +   ECTE          GSH+C    A   + D GF  C C
Sbjct: 247 CHCKPGYQAD----VEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRC 298


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,987
Number of Sequences: 429
Number of extensions: 7832
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 2
length of query: 654
length of database: 140,377
effective HSP length: 62
effective length of query: 592
effective length of database: 113,779
effective search space: 67357168
effective search space used: 67357168
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 47 (23.0 bits)