Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001119-TA|BGIBMGA001119-PA|IPR002005|Rab GTPase
activator
         (443 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    26   0.46 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    25   1.4  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    23   3.3  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    23   3.3  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    23   3.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   7.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   10.0 
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      22   10.0 

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 26.2 bits (55), Expect = 0.46
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 161 DPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDNYL 197
           + +T N++ L D+FG +          LA+  D NYL
Sbjct: 462 EAATLNLRKLVDQFGAEWAETTIIPKVLAMSRDQNYL 498


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 72  NVDLIPKFLMANGLLVKLLIHTGVTRYL 99
           N+D IP  ++   L+  +LIH G T+++
Sbjct: 446 NIDPIPLVVVLTHLIPFMLIHQGETQFV 473



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/28 (28%), Positives = 19/28 (67%)

Query: 72  NVDLIPKFLMANGLLVKLLIHTGVTRYL 99
           N++ +P  ++A  +L  L++H G T+++
Sbjct: 164 NIEPLPNVILACHMLSFLMVHQGETQFV 191


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 69  RDWNVDLIPKFLMANGLLVKLLIHTGVTRYL 99
           R W   +I KFL   GL+   L   G+  +L
Sbjct: 181 RKWQNKVIQKFLWTGGLVTSALFAYGLRIWL 211


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 69  RDWNVDLIPKFLMANGLLVKLLIHTGVTRYL 99
           R W   +I KFL   GL+   L   G+  +L
Sbjct: 414 RKWQNKVIQKFLWTGGLVTSALFAYGLRIWL 444


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 69  RDWNVDLIPKFLMANGLLVKLLIHTGVTRYL 99
           R W   +I KFL   GL+   L   G+  +L
Sbjct: 414 RKWQNKVIQKFLWTGGLVTSALFAYGLRIWL 444


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 291 VRKKGQVIRCICLLDHPISNTKDALSTQII 320
           V K G++I  I   DH I +  +  S QI+
Sbjct: 936 VSKSGELIHKIATNDHEIIDKIEMFSLQIL 965


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 79  FLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRR 138
           FL+ +   + L++ + V  Y   ++ +    YKGGK  KV     +++A        KRR
Sbjct: 489 FLVNDFGFIWLVLSSTVRAYAS-RAFKKIVTYKGGKYRKVTFQCLKSIAWRAFLAVLKRR 547

Query: 139 FRNFLIYVQDFQEEDAKTWKDFD 161
              +   +   +  +  T K  D
Sbjct: 548 TEIYKGLIDRIKSREKLTMKFHD 570


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 24  SVSGKKVLHIDRNKYYGGESA 44
           S++ K V    RN YYGG ++
Sbjct: 341 SITSKNVAKKIRNFYYGGPNS 361


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,487
Number of Sequences: 317
Number of extensions: 4226
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 443
length of database: 114,650
effective HSP length: 59
effective length of query: 384
effective length of database: 95,947
effective search space: 36843648
effective search space used: 36843648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)