Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001119-TA|BGIBMGA001119-PA|IPR002005|Rab GTPase
activator
(443 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 477 e-135
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 475 e-134
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ... 371 e-103
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 51 2e-06
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long... 32 0.88
At4g37190.1 68417.m05265 expressed protein 31 2.0
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long... 30 3.6
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 29 4.7
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ... 29 8.2
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 477 bits (1176), Expect = e-135
Identities = 233/434 (53%), Positives = 303/434 (69%), Gaps = 3/434 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 60
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59
Query: 61 PDETY-GRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 119
+ G RD+NVD++PKF+MANG LV++LIHT VT+YL FK+++GSYV+ GK+ KVP
Sbjct: 60 KAPAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVP 119
Query: 120 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 179
EAL S LMG+FEKRR F YVQ++ E+D KT D + L KFGL +
Sbjct: 120 ATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKED 179
Query: 180 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXX-XXFA 238
T DF GHA+AL+ +DN+L QPA T+ R+KLY++SLA+ FA
Sbjct: 180 TIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
Query: 239 RLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVI 298
RLSA+YGGTYML+KP ++ E+GKV GV S ETAKCK+V CDPSY+ ++VRK G+V
Sbjct: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVVCDPSYLTNKVRKIGRVA 299
Query: 299 RCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVE 358
R I ++ HPI NT D+ S Q+I+PQKQ+ R SD+YV SY+H VA KG FIA VST E
Sbjct: 300 RAIAIMSHPIPNTNDSQSVQVILPQKQLGRKSDMYVFCCSYSHNVAPKGKFIAFVSTDAE 359
Query: 359 TNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVL 418
T++P++E++PG+ LLG + + F + D YEP+++ + FIS SYDATTHF+TT +DVL
Sbjct: 360 TDNPQTELQPGIDLLGPVDELFFDIYDRYEPVNEPTLDNCFISTSYDATTHFDTTVVDVL 419
Query: 419 KIYKHGTGEEFDFS 432
+YK TG+E D S
Sbjct: 420 NMYKLITGKELDLS 433
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 475 bits (1172), Expect = e-134
Identities = 234/435 (53%), Positives = 301/435 (69%), Gaps = 5/435 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP- 59
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59
Query: 60 -APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 118
AP E G RD+NVD++PKF+M NG LV+ LIHT VT+YL FK+++GSYV+ GK+ KV
Sbjct: 60 KAP-EHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKV 118
Query: 119 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 178
P EAL S LMG+FEKRR F +VQ++ E+D KT D + + L K+GLD
Sbjct: 119 PATPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDG 178
Query: 179 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXX-XXF 237
NT DF GHA+AL+ +D +L QPA T+ R+KLY++SLA+ F
Sbjct: 179 NTIDFIGHAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAF 238
Query: 238 ARLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQV 297
ARLSA+YGGTYML+KP ++ E GKV+GV S ETAKCK++ CDPSY+P++VRK G+V
Sbjct: 239 ARLSAVYGGTYMLNKPECKVEFDEGGKVIGVTSEGETAKCKKIVCDPSYLPNKVRKIGRV 298
Query: 298 IRCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTV 357
R I ++ HPI NT D+ S Q+IIPQKQ+ R SD+YV SY+H VA KG FIA VST
Sbjct: 299 ARAIAIMSHPIPNTNDSHSVQVIIPQKQLARKSDMYVFCCSYSHNVAPKGKFIAFVSTDA 358
Query: 358 ETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDV 417
ET++P++E++PG LLG + + F + D YEP+++ FIS SYDATTHFETT DV
Sbjct: 359 ETDNPQTELKPGTDLLGPVDEIFFDMYDRYEPVNEPELDNCFISTSYDATTHFETTVADV 418
Query: 418 LKIYKHGTGEEFDFS 432
L +Y TG++ D S
Sbjct: 419 LNMYTLITGKQLDLS 433
>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
strong similarity to GDP dissociation inhibitor protein
OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
PF00996: GDP dissociation inhibitor
Length = 365
Score = 371 bits (913), Expect = e-103
Identities = 181/353 (51%), Positives = 237/353 (67%), Gaps = 1/353 (0%)
Query: 81 MANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFR 140
MANGLLV+ LIHT VT+YL FK+++GS+VYK GKI KVP EAL S LMG+FEKRR R
Sbjct: 1 MANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPATDVEALKSPLMGLFEKRRAR 60
Query: 141 NFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQP 200
F IYVQD+ E+D K+ + D S + + K+GL+ +T DF GHALAL+ DD+YL QP
Sbjct: 61 KFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDTIDFIGHALALHNDDDYLDQP 120
Query: 201 AIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXX-XXFARLSAIYGGTYMLDKPIDEIVL 259
AI ++RIKLY++SLA+ FARLSA+YGGTYML+KP ++
Sbjct: 121 AIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEF 180
Query: 260 GEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQI 319
GK +GV S ETAKCK+V CDPSY+ ++V+K G+V R +C++ HPI +T DA S QI
Sbjct: 181 DGSGKAIGVTSAGETAKCKKVVCDPSYLSEKVKKVGKVTRAVCIMSHPIPDTNDAHSVQI 240
Query: 320 IIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQK 379
I+PQKQ+ R SD+Y+ SY H VA KG +IA VS ET++PE E++PG+ LLG +
Sbjct: 241 ILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVSAEAETDNPEEELKPGIELLGPTDEI 300
Query: 380 FVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 432
F D Y P + + FIS +YDATTHFE+T +DVL +Y TG+ D S
Sbjct: 301 FYHSYDTYVPTNIQEEDNCFISATYDATTHFESTVVDVLDMYTKITGKTLDLS 353
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family
protein / Rab GTPase activator family protein similar
to SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 50.8 bits (116), Expect = 2e-06
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 5 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT-PLEELFAKFNAPAP 61
YD+IV+GTG+ E +L+ S SG VLH+D N +YG AS++ P F N+ +P
Sbjct: 15 YDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTSFLHSNSVSP 72
Score = 49.2 bits (112), Expect = 5e-06
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 22/236 (9%)
Query: 69 RDWNVDLI-PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-YKGGKISKVPVDQKEAL 126
R +NVDL P+ + + L++ +G Y+EFKSI+ S+V G++ VP D + A+
Sbjct: 118 RRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVP-DSRAAI 176
Query: 127 ASD-LMGMFEKRRFRNFLIYVQDF-----QEEDAKTWK-DFDPSTANMQSLYDKFGLDRN 179
D + + EK + F VQ +++D+ T K + + K L
Sbjct: 177 FKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPK 236
Query: 180 TQDFTGHALAL--YLDDN-YLQQPAIQT---IRRIKLYSDSLAKXXXXXXXXX--XXXXX 231
+ +A+A+ Y DN + ++T I R+ LY S+ +
Sbjct: 237 IKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQG 296
Query: 232 XXXXXFARLSAIYGGTYMLDKPIDEIVLG-EDGKVVGVR--SGNETAKCKQVYCDP 284
F R +A+ G Y+L PI ++L E G GVR SG E K + DP
Sbjct: 297 ELPQAFCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLI-LDP 351
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 726
Score = 31.9 bits (69), Expect = 0.88
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 46
M + D +V+G+G + +G+L+ +G KVL I+ YY S+
Sbjct: 220 MKIQCDAVVVGSGSGGGVAAGVLAKAGYKVLVIESGNYYARSKLSL 265
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 2.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 151 EEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 188
+E+ + W DF S + QSLY+ GL ++Q F + +
Sbjct: 146 DEEVECWTDFSKSHYHPQSLYELNGLWMDSQAFNNYGI 183
>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 746
Score = 29.9 bits (64), Expect = 3.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 6 DVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETY 65
DV+V+G+G + + +L+ SG KV+ +++ Y+ TP E F P D+ Y
Sbjct: 234 DVVVVGSGSGGGVAASVLAKSGLKVVVLEKGSYF-------TPSEH--RPFEGPGLDKLY 284
Query: 66 GRG 68
G
Sbjct: 285 ENG 287
>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 663
Score = 29.5 bits (63), Expect = 4.7
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 334 VSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDG 393
+SV+SYTHQ F +V+ T++ + E E+ F DY + DD
Sbjct: 46 LSVLSYTHQHPHSSRFPFLVAATLDGSSAEEEL-DFEEFDQYAEDNFAD--DYSDDEDDS 102
Query: 394 SQSQIFISESYDATTHFETTCLDVLKI 420
+ E+ D + TT LKI
Sbjct: 103 IDISVLEKEARDIVRDYATTLSRELKI 129
>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
carotenoid isomerase from Lycopersicon esculentum
[gi:19550437]; contains Pfam profile: PF02032 Phytoene
dehydrogenase related enzyme
Length = 595
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 5 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43
YD IV+G+G+ + + L+V +VL +++ GG S
Sbjct: 78 YDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSS 116
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,936
Number of Sequences: 28952
Number of extensions: 447165
Number of successful extensions: 935
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 10
length of query: 443
length of database: 12,070,560
effective HSP length: 83
effective length of query: 360
effective length of database: 9,667,544
effective search space: 3480315840
effective search space used: 3480315840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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