GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001119-TA|BGIBMGA001119-PA|IPR002005|Rab GTPase
activator
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...   490   e-139
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    67   5e-12
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    33   0.11 
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       27   5.3  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   7.0  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   9.2  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   9.2  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score =  490 bits (1208), Expect = e-139
 Identities = 237/429 (55%), Positives = 308/429 (71%), Gaps = 2/429 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 59
           MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+  L +L+A F    
Sbjct: 1   MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59

Query: 60  APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 119
              E+ GR RDW VDL+PKFLMANG L  +LI+T VTRY+EFK I GSYVY+ G+I+KVP
Sbjct: 60  QRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119

Query: 120 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 179
            ++ EAL S LM +FEKRR + FL +V +++E+D  T+KD +    +M+S++ KFGL   
Sbjct: 120 GNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSG 179

Query: 180 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFAR 239
           TQDF GHA+ALYLDD YL++PA +T  RI LY+ S+AK                   FAR
Sbjct: 180 TQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPLYGLGELPQGFAR 239

Query: 240 LSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIR 299
           LSAIYGGTYML++P+DEIV G+DG  +GVRSG++ AK KQ+  DPSY  ++VR  G+++R
Sbjct: 240 LSAIYGGTYMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVR 299

Query: 300 CICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVET 359
            IC+L+HPI NT +  S QIIIPQ QV+R  DIY++ +S  H V  KG+++A++ST VET
Sbjct: 300 AICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVET 359

Query: 360 NDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLK 419
            +P SEI PGL LLG + + F  V + YEP+ DG++ Q +IS+S DAT+HFET   DV  
Sbjct: 360 ANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDVRD 419

Query: 420 IYKHGTGEE 428
           IYK  TG +
Sbjct: 420 IYKRMTGTD 428


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 66.9 bits (156), Expect = 5e-12
 Identities = 75/302 (24%), Positives = 126/302 (41%), Gaps = 33/302 (10%)

Query: 5   YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT--PLEELFAKFNAPAPD 62
           YDVI++GT L+  ILS  LS + ++VLHID N +YG    S+T   LE++  K       
Sbjct: 7   YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSS 66

Query: 63  ETYGRG------------RDWNVDLIPK-----------FLMANGLLVKLLIHTGVTRYL 99
           +                 +  N DLIPK            + A+  LVKLL  T + +YL
Sbjct: 67  QILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYL 126

Query: 100 EFKSIEG-SYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWK 158
             K       +    +  KVP  + +   +  + +  KR    F+ +V +  +E  +   
Sbjct: 127 LLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLV 186

Query: 159 DFDPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKX 218
               S    + L + F L    ++   + L   L  +   + A+ T+  +K +       
Sbjct: 187 KEWESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKDIPTKDALDTV--LKYFHSFGMYG 244

Query: 219 XXXXXXXXXXXXXXXXXXFARLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCK 278
                             F R SA+ GGT+ML + ID+I   ++ K+V ++ G+ T   K
Sbjct: 245 DYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAIDKI---DESKIV-LKDGS-TLSAK 299

Query: 279 QV 280
           ++
Sbjct: 300 KI 301


>SPBC713.12 |erg1||squalene monooxygenase Erg1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 12/34 (35%), Positives = 22/34 (64%)

Query: 3  EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 36
          ++ D+I++G G+  C L   L   G+KVL ++R+
Sbjct: 4  QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 27 GKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 83
          GKK +  +RN Y   ++    PL     K + P+  ++  + +D N D   + L+ N
Sbjct: 2  GKKSVSFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNN 58


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 380 FVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGT 425
           + S+ D Y  I   SQ  I +S  +  + HF  T  +VL     G+
Sbjct: 92  YTSLRDAYACIHTHSQEAILLSTLFADSDHFSATGFEVLSYIPKGS 137


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 49 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 79
          L  L  K  A AP +TY   + W    +PKF
Sbjct: 32 LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 5/27 (18%)

Query: 141 NFLIYVQDFQEEDAKTWKDFDPSTANM 167
           N LIY+ + Q     TWKD+DP++  M
Sbjct: 22  NELIYIDEEQ-----TWKDYDPNSLKM 43


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 307 PISNTKDALS-TQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESE 365
           P S T  A S ++  + QK     S++    +SYT    A        STT E N P SE
Sbjct: 254 PSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPFIPESTTREDNQPFSE 313

Query: 366 IR 367
           IR
Sbjct: 314 IR 315


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,732
Number of Sequences: 5004
Number of extensions: 87308
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 9
length of query: 443
length of database: 2,362,478
effective HSP length: 75
effective length of query: 368
effective length of database: 1,987,178
effective search space: 731281504
effective search space used: 731281504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)