Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001119-TA|BGIBMGA001119-PA|IPR002005|Rab GTPase
activator
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 495 e-140
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 492 e-139
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 491 e-139
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 450 e-126
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 74 2e-13
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022... 55 1e-07
01_05_0559 + 23281408-23282457,23282580-23282942,23283938-232839... 32 0.80
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 32 1.1
02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138... 31 2.4
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186... 29 5.6
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 29 5.6
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733... 29 5.6
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133... 29 5.6
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 29 7.4
08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298... 29 7.4
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 29 7.4
02_04_0468 - 23172561-23174201 29 9.8
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 495 bits (1221), Expect = e-140
Identities = 243/434 (55%), Positives = 305/434 (70%), Gaps = 3/434 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP- 59
MDEEYDVIVLGTGLKECILSG+LSV G KVLH+DRN YYGG+S S+ L +L+ +F
Sbjct: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLN-LNQLWKRFRGED 59
Query: 60 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 119
P G RD+NVD++PKF+MANG LV+ LIHT VT+YL FK+++GSYV+ GKI KVP
Sbjct: 60 KPPAHLGASRDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVP 119
Query: 120 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 179
EAL S LMG+FEKRR RNF IYVQD+ E D KT + D +T + L K+GL +
Sbjct: 120 ATDMEALKSPLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGLSDD 179
Query: 180 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXX-XXFA 238
T DF GHALAL+ DD YL +PAI T++R+KLY++SLA+ FA
Sbjct: 180 TVDFIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFA 239
Query: 239 RLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVI 298
RLSA+YGGTYML+KP ++ +GKV GV S ETAKCK+V CDPSY+P++VRK G+V
Sbjct: 240 RLSAVYGGTYMLNKPDCKVEFDMEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKIGKVA 299
Query: 299 RCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVE 358
R I ++ HPI+NT D+ S QII+PQKQ+ R SD+YV SYTH VA KG FIA VST E
Sbjct: 300 RAIAIMSHPIANTNDSHSVQIILPQKQLGRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAE 359
Query: 359 TNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVL 418
T+ PESE++PG+ LLG + + F + D YEP+++ S F+S SYDATTHFETT DVL
Sbjct: 360 TDHPESELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETTVTDVL 419
Query: 419 KIYKHGTGEEFDFS 432
+Y TG+ D S
Sbjct: 420 NMYTLITGKTVDLS 433
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 492 bits (1214), Expect = e-139
Identities = 240/434 (55%), Positives = 306/434 (70%), Gaps = 3/434 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP- 59
MDEEYDVIVLGTGLKECILSG+LSV G KVLH+DRN YYGG+S S+ L +L+ +F
Sbjct: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLN-LNQLWKRFRGED 59
Query: 60 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 119
P G +D+NVD++PKF+MANG LV+ LIHT VT+YL FK+++GSYV+ GKI KVP
Sbjct: 60 KPPAHLGSSKDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVP 119
Query: 120 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 179
EAL S LMG+FEKRR RNF IYVQD+ E D KT + D +T + L K+GL +
Sbjct: 120 ATDMEALKSPLMGLFEKRRARNFFIYVQDYNEADPKTHQGLDLTTMTTRELIAKYGLSDD 179
Query: 180 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXX-XXFA 238
T DF GHALAL+ DD YL +PAI T++R+KLY++SLA+ FA
Sbjct: 180 TVDFIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFA 239
Query: 239 RLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVI 298
RLSA+YGGTYML+KP ++ +GKV GV S ETAKCK+V CDPSY+P++VRK G+V
Sbjct: 240 RLSAVYGGTYMLNKPDCKVEFDMEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKIGKVA 299
Query: 299 RCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVE 358
R I ++ HPI++T D+ S QII+PQKQ+ R SD+YV SYTH VA KG FIA VST E
Sbjct: 300 RAIAIMSHPIASTNDSHSVQIILPQKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSTEAE 359
Query: 359 TNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVL 418
T++P+SE++PG+ LLG + + F + D YEP+++ S F+S SYDATTHFETT DVL
Sbjct: 360 TDNPQSELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETTVTDVL 419
Query: 419 KIYKHGTGEEFDFS 432
+Y TG+ D S
Sbjct: 420 NMYTLITGKAVDLS 433
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 491 bits (1211), Expect = e-139
Identities = 236/435 (54%), Positives = 308/435 (70%), Gaps = 5/435 (1%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKF--NA 58
MDEEYDVIVLGTGLKECI+SG+LSV G KVLH+DRN YYGGES S+ L +L+ +F N
Sbjct: 1 MDEEYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESTSLN-LTKLWKRFKGNE 59
Query: 59 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 118
AP E G +++NVD++PKF+MANG LV++LIHT VT+YL FK+++GS+VY GKI KV
Sbjct: 60 TAP-EHLGVSKEYNVDMVPKFMMANGALVRVLIHTSVTKYLNFKAVDGSFVYNNGKIHKV 118
Query: 119 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 178
P EAL S+LMG+FEKRR R F IYVQD++E+D K+ + D + + K+GL+
Sbjct: 119 PATDVEALKSNLMGLFEKRRARKFFIYVQDYEEDDPKSHEGLDLHKVTTREVISKYGLED 178
Query: 179 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXX-XXF 237
+T DF GHALAL+ DDNYL +PAI T++R+KLY++SLA+ F
Sbjct: 179 DTVDFIGHALALHRDDNYLDEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLAELPQAF 238
Query: 238 ARLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQV 297
ARLSA+YGGTYML+K ++ E+GK GV S ETAKCK+V CDPSY+PD+V+K G+V
Sbjct: 239 ARLSAVYGGTYMLNKAECKVEFDENGKAYGVTSEGETAKCKKVVCDPSYLPDKVKKVGRV 298
Query: 298 IRCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTV 357
R IC++ HPI +TKD+ S QII+P+KQ++R SD+YV SY H VA KG FIA VST
Sbjct: 299 ARAICIMKHPIPDTKDSHSVQIILPKKQLKRKSDMYVFCCSYAHNVAPKGKFIAFVSTEA 358
Query: 358 ETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDV 417
E + PE E++PG+ LLG + + F + D YEP + + F++ SYDATTHFETT DV
Sbjct: 359 EADKPEIELKPGIDLLGPVEETFFDIYDRYEPTNTADEDNCFVTNSYDATTHFETTVKDV 418
Query: 418 LKIYKHGTGEEFDFS 432
L +Y TG+E D S
Sbjct: 419 LALYSKITGKELDLS 433
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 450 bits (1109), Expect = e-126
Identities = 234/457 (51%), Positives = 298/457 (65%), Gaps = 31/457 (6%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 60
MD EYDVIVLGTGLKECILSG+LSV KVLH+DRN YYGG+S S+ L +L+ +F
Sbjct: 1 MDVEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLN-LNQLWKRFKGEG 59
Query: 61 -PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 119
P G RD+NVD+IPKF+MANG LV++LIHTGVT+YL FK+++GSYV+ GKI KVP
Sbjct: 60 TPPAQIGASRDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVP 119
Query: 120 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 179
EAL S LMG+FEKRR F ++VQD++E D T K +D + + L K+GLD N
Sbjct: 120 STDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDN 179
Query: 180 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXX-XXXXXXXXXXXXXXFA 238
T DF GHA+AL+ +DNYL +PAI T LY++S+ + FA
Sbjct: 180 TIDFIGHAVALHKEDNYLTEPAIDT-----LYAESVGRFQGGSPYIYPLYGLGELPQGFA 234
Query: 239 RLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVI 298
RLSA+YGGTYML+KP +I ++GKV GV S ETAKCK+V CDPSY+PD+VRK G+V
Sbjct: 235 RLSAVYGGTYMLNKPECKIEFNDEGKVCGVTSEGETAKCKKVVCDPSYIPDKVRKVGKVF 294
Query: 299 RCICLLDHPISNTKDALSTQIIIPQKQVERNSDI-----------------------YVS 335
R I ++ HPI NT D+ S QIIIPQKQ+ R SD+ YV
Sbjct: 295 RAIAIMSHPIPNTADSHSVQIIIPQKQLGRKSDMQITLGLLVISIIVTKECSLVHARYVF 354
Query: 336 VVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQ 395
SY+H VA+KG FIA VS E+ +P +E++PG+ LLG + + F+ D +EP +D S
Sbjct: 355 CCSYSHNVASKGKFIAFVSAQAESENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSS 414
Query: 396 SQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 432
FIS SYDATTHFE+T +DVL IY TG+ D S
Sbjct: 415 DNCFISTSYDATTHFESTVMDVLSIYTKITGKTVDLS 451
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 74.1 bits (174), Expect = 2e-13
Identities = 105/416 (25%), Positives = 175/416 (42%), Gaps = 70/416 (16%)
Query: 5 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN------- 57
+DV++ GTGL E +L+ + +GK VLH+D N +YG +S+ PL L + +
Sbjct: 24 FDVVLCGTGLPESVLAAACAAAGKTVLHVDPNPFYGSLFSSL-PLPSLPSFLSPSPSDDP 82
Query: 58 APAPD------------------ETYGR----GRDWNVDLI-PKFLMANGLLVKLLIHTG 94
AP+P ET G R + DL+ P+ L V LL+ +G
Sbjct: 83 APSPSPSSAAAVDLRRRSPYSEVETSGAVPEPSRRFTADLVGPRLLYCADEAVDLLLRSG 142
Query: 95 VTRYLEFKSIEG-SYVYKGGKISKVPVDQKEALASDL-MGMFEKRRFRNFLIYVQDF--- 149
+ ++EFKS+EG + +Y G + VP D ++A+ D + + EK F VQ
Sbjct: 143 GSHHVEFKSVEGGTLLYWDGDLYPVP-DSRQAIFKDTTLQLREKNLLFRFFKLVQAHIAA 201
Query: 150 ---------QEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHALAL--YLDDNYLQ 198
+ E + D D ++ L + L + +A+A+ Y D
Sbjct: 202 SAAGAAAAGEGEASGRLPDEDLDLPFVEFL-KRQNLSPKMRAVVLYAIAMADYDQDGVES 260
Query: 199 QPAIQTIRR----IKLYSDSLAKXXXXXXXXXXXXXXXXXX--XFARLSAIYGGTYMLDK 252
+ T R I LYS S+ + F R +A+ G Y+L
Sbjct: 261 CERLLTTREGVKTIALYSSSIGRFANAEGAFIYPMYGHGELPQAFCRCAAVKGALYVLRM 320
Query: 253 PIDEIVLGEDGK-VVGVR-SGNETAKCKQVYCDPSY-VPDRVRKKG--------QVIRCI 301
P +++ E+ K VG+R + + C+Q+ DPSY +P +V R I
Sbjct: 321 PATALLVDEEKKRYVGIRLASGQDILCQQLILDPSYEIPSLDMPSDAPVSNLPRKVARGI 380
Query: 302 CLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAA--KGWFIAMVST 355
C++ + +D + ++ P K +E V V+ + +A G F+A +ST
Sbjct: 381 CIISSSV--RQDTSNVLVVFPPKSLEEEQITAVRVLQLSSNLAVCPPGMFMAYLST 434
>12_02_1229 +
27197464-27197481,27200438-27201583,27201935-27202201,
27202849-27202882,27202997-27203100,27203174-27203308,
27203367-27203511,27203864-27203880
Length = 621
Score = 54.8 bits (126), Expect = 1e-07
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVL 31
MDEEYDVIVLGTGL ECILSG+LSV G K +
Sbjct: 449 MDEEYDVIVLGTGLMECILSGLLSVDGLKFI 479
>01_05_0559 +
23281408-23282457,23282580-23282942,23283938-23283991,
23284088-23284156
Length = 511
Score = 32.3 bits (70), Expect = 0.80
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 6 DVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG---GESASITPLEEL 52
++I++ TGLK CI + ++G VL + N G GE A + +E+L
Sbjct: 265 EIILMNTGLKSCIPPELGMLTGLAVLDVSHNSLMGAIPGELARLENIEQL 314
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 4 EYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43
EYD IV+G+G+ + + L+ G +VL +++ GG S
Sbjct: 68 EYDAIVVGSGIGGMVAATQLAAKGARVLVLEKYVIPGGSS 107
>02_01_0206 +
1388149-1388330,1388527-1388629,1388896-1388964,
1389684-1389803,1390352-1390482,1390840-1390881,
1390961-1391138,1391241-1391319,1391441-1391610,
1392503-1392629,1392731-1392846,1392926-1393033,
1393118-1393180,1393283-1393456,1393814-1393978
Length = 608
Score = 30.7 bits (66), Expect = 2.4
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 82 ANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRN 141
A + KLL+ R +++ +V +GG+ S++PVD ++ S++ + RF+
Sbjct: 378 AKDFVKKLLVKNPRARLTAAQALSHPWVREGGEASEIPVD--ISVLSNMRQFVKYSRFKQ 435
Query: 142 FLI--YVQDFQEEDAKTWKD-FD 161
F + +EE+ KD FD
Sbjct: 436 FALRALASTLKEEELADLKDQFD 458
>10_08_0015 +
14116129-14116691,14116810-14117128,14117588-14118664,
14118754-14119056
Length = 753
Score = 29.5 bits (63), Expect = 5.6
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 389 PIDDGSQSQIFISESYDATTHFETTCLDVL------KIYKHGTGEEFDFSKVKLELGEED 442
P D + +E D T ETT DVL ++ HG G+ D S V ++L D
Sbjct: 36 PSGDQTLDSDVANEPNDGETEIETTVDDVLSESTHEQVENHGDGDNVDDSSVHIDLDSSD 95
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 29.5 bits (63), Expect = 5.6
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 3 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPD 62
E YD IV+G G C L+ LS+ K +L YG + S +E + APD
Sbjct: 49 ETYDYIVVGGGTAGCPLAATLSLKYKVLLLERGGSPYGNRNVSY--MENFHIGLSNMAPD 106
>08_02_0456 -
17362080-17364156,17364853-17364942,17372615-17373318,
17373421-17373451,17374366-17374448,17374517-17374640,
17376427-17376560
Length = 1080
Score = 29.5 bits (63), Expect = 5.6
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 77 PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVD-QKEALASDLMGMFE 135
P+++ G + +H + ++ KSIE ++V G I VP+D QK+ L+ E
Sbjct: 597 PRYIGKFGEVKSCRVHDTILDFIRSKSIEENFVTLLG-IPNVPIDRQKKVRRLSLLVNTE 655
Query: 136 K---RRFRNFLIYVQDFQEEDAKTWKD 159
+ N + YV D +E+D+ +D
Sbjct: 656 EYYSSLEENNIKYVLDKKEDDSNEQED 682
>03_06_0352 -
33312443-33312652,33312747-33312854,33313224-33313397,
33313489-33313695,33313700-33313987,33314087-33314319,
33314450-33315263
Length = 677
Score = 29.5 bits (63), Expect = 5.6
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 324 KQVERNSDIYVSVVSYTHQVAAKG-WFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVS 382
K+VER +Y+ ++Y H+ G W ++ E P + PG + I Q VS
Sbjct: 542 KKVEREGSMYIGNINYYHRPLRSGKWSVSYEEWQEEVYPPYAN-GPGYVISSDIAQYIVS 600
Query: 383 VTD 385
D
Sbjct: 601 EFD 603
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 94 GVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEED 153
G+ LE ++ +++ G + + + + +A D + K+R RN L+YV+D +
Sbjct: 53 GIEHGLEL--VKQRIIWRVGNGDNIKIWRHKWVAHDDRLITLKKRVRNRLMYVKDLMDAG 110
Query: 154 AKTWKD 159
+++W +
Sbjct: 111 SRSWNE 116
>08_01_1077 -
11027732-11027839,11028346-11028477,11029722-11029802,
11029911-11030063,11030167-11030281,11030282-11030927,
11031409-11031613,11031696-11031758
Length = 500
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 154 AKTWKDFDPSTANMQSLYDKFGLDR-NTQDFTGHAL 188
+K WK+ S + DKFG+DR +F H L
Sbjct: 137 SKRWKELSASAPCLDICVDKFGMDRVRFSEFVAHLL 172
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 29.1 bits (62), Expect = 7.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 2 DEEYDVIVLGTGLKECILSGMLS-VSGKKVLHIDRNKYYGGESASITPL 49
+E YD IV+G G C L+ L+ G +VL ++R GG A PL
Sbjct: 52 EEAYDYIVVGGGTAGCPLAATLAGPGGGRVLVLER----GGAPAEFPPL 96
>02_04_0468 - 23172561-23174201
Length = 546
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 118 VPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKD 159
VPVD KEALA D++ R R +IY D +W D
Sbjct: 380 VPVDFKEALADDVLPDGTPVRARQRVIYYTYAIGRDPASWGD 421
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,480,499
Number of Sequences: 37544
Number of extensions: 523403
Number of successful extensions: 1086
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 21
length of query: 443
length of database: 14,793,348
effective HSP length: 84
effective length of query: 359
effective length of database: 11,639,652
effective search space: 4178635068
effective search space used: 4178635068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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