Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001119-TA|BGIBMGA001119-PA|IPR002005|Rab GTPase
activator
(443 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 390 e-108
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14) 136 4e-32
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 7e-23
SB_43781| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 4e-16
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 73 5e-13
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.81
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 30 4.3
SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033) 29 5.7
SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088) 29 10.0
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 390 bits (960), Expect = e-108
Identities = 188/337 (55%), Positives = 240/337 (71%), Gaps = 8/337 (2%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 59
MD EYD +VLGTGLKEC+LSG+LS++ KKVLH+DRNKYYGG+ AS+ PL +L+ F
Sbjct: 1 MDAEYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCASLHPLNQLYETFGRTD 60
Query: 60 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV-TRYLEFKSIEGSYVYKGGKISKV 118
P ++ G+ RD+NVDLIPKFLMA+G LVK+L+HTGV T+Y+ FK IEGS+VY+GG + KV
Sbjct: 61 FPGDSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKV 120
Query: 119 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKD-----FDPSTANMQSLYDK 173
P ++KEAL S LMG+FEKRRFRNFLI+ + E+A TWKD FDP M ++
Sbjct: 121 PANEKEALNSSLMGIFEKRRFRNFLIFALGVEPENASTWKDYAGGNFDPKKTTMNDVFKA 180
Query: 174 FGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXX 233
+ L ++T DFTGHA+ALY DD Y+ +P + I RIKLY SL+K
Sbjct: 181 YDLSQDTADFTGHAIALYRDDEYMSKPCEEAIMRIKLYYQSLSKYGGSPYIYPVYGLGEL 240
Query: 234 XXXFARLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRK 293
FARL A++GGTYMLDK IDE+++ E+G V GV++ E AK K V DPSY PDRVR
Sbjct: 241 PQGFARLCAVWGGTYMLDKAIDEVIM-ENGVVKGVKTQGEVAKAKVVIGDPSYFPDRVRS 299
Query: 294 KGQVIRCICLLDHPISNTKDALSTQIIIPQKQVERNS 330
G+V+RCIC+L HPI+NT + S Q+IIPQ QV RNS
Sbjct: 300 IGKVVRCICILSHPIANTNNKQSCQLIIPQNQVNRNS 336
>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
Length = 175
Score = 136 bits (328), Expect = 4e-32
Identities = 68/131 (51%), Positives = 85/131 (64%)
Query: 167 MQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXX 226
M +Y KFGLD NT DF GHA+AL ++D+Y QP QT+ +IKLY++SL++
Sbjct: 1 MTEVYQKFGLDANTADFVGHAMALEINDSYKDQPFGQTVEKIKLYNESLSRYGKSPYLYP 60
Query: 227 XXXXXXXXXXFARLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSY 286
FARLSAIYGGTYMLDKPI+ IV ++G V GV S ETA+ K V D SY
Sbjct: 61 LYGLGEIPQGFARLSAIYGGTYMLDKPIEAIVYDDEGVVKGVTSQGETARAKIVLGDSSY 120
Query: 287 VPDRVRKKGQV 297
PD+V+K GQV
Sbjct: 121 FPDKVKKVGQV 131
Score = 49.2 bits (112), Expect = 7e-06
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 377 RQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFSKVKL 436
R K V Y P Q+FI +S DA +HF C D+ +Y+ TGE FDFSK++
Sbjct: 110 RAKIVLGDSSYFPDKVKKVGQVFIPKSCDALSHFNKDCQDIEDLYERITGEPFDFSKLQT 169
Query: 437 EL 438
++
Sbjct: 170 QI 171
>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 105 bits (252), Expect = 7e-23
Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 4/74 (5%)
Query: 16 ECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDE----TYGRGRDW 71
ECILSG LSV+GKKVLH+D K+YGGE+AS+TPL +LF KFN P E +GR RDW
Sbjct: 19 ECILSGALSVAGKKVLHMDSQKFYGGETASLTPLSQLFDKFNRSMPKEEIEKRFGRERDW 78
Query: 72 NVDLIPKFLMANGL 85
NVDL+PKF+MA G+
Sbjct: 79 NVDLVPKFIMAGGI 92
>SB_43781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 83.0 bits (196), Expect = 4e-16
Identities = 38/66 (57%), Positives = 51/66 (77%)
Query: 332 IYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPID 391
IY+ VS T+ V K ++A+VSTTVET DPE E+ PGL LLG I +KFVSV++ YEP+D
Sbjct: 2 IYICCVSQTNLVTPKDKYLAIVSTTVETADPEKELEPGLKLLGKIDEKFVSVSNLYEPLD 61
Query: 392 DGSQSQ 397
DG++S+
Sbjct: 62 DGTESK 67
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 72.9 bits (171), Expect = 5e-13
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 11/190 (5%)
Query: 69 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 128
R +N+DL PK L++ G LV+ LI ++ Y EFK++ + G + VP + + +S
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCSRSDVFSS 382
Query: 129 DLMGMFEKRRFRNFLIYVQDFQE--EDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGH 186
L+ + EKR FL + D E E+ K ++D P ++S + N Q F H
Sbjct: 383 KLIPVIEKRLLMKFLTFCLDHNEHLEEYKPFED-KPFVEFLKSR----RMTPNLQHFVIH 437
Query: 187 ALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFARLSAIYGG 246
A+A+ D I + + + SL + + R+ A++GG
Sbjct: 438 AIAMVKPDAL----TIDGLNAAQSFLMSLGRYGNSPFIWPLYGLGELPQAYCRMCAVFGG 493
Query: 247 TYMLDKPIDE 256
Y L K I +
Sbjct: 494 LYCLHKSIKQ 503
Score = 56.8 bits (131), Expect = 3e-08
Identities = 26/44 (59%), Positives = 31/44 (70%)
Query: 4 EYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
EYD IVLGTGL E +++ LS G KVLH+DRN YY + AS T
Sbjct: 7 EYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFT 50
>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 32.3 bits (70), Expect = 0.81
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 3 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41
+E D +V+G+G+ + +L+ +GKK+L ++++ GG
Sbjct: 84 DEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGG 122
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 97 RYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQ 150
R+L+F+ + S + KG K+P + E +A ++ + +R F L Y+ D +
Sbjct: 368 RWLQFEKVVASLIEKGFNSIKLP--EAERIAEEVCQIDNEREFLTLLNYLHDLK 419
>SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)
Length = 431
Score = 29.5 bits (63), Expect = 5.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 323 QKQVERNSDIYVSVVSYTHQVAAKGWFI 350
QK+ E++ D+++ V+ TH+ W I
Sbjct: 160 QKETEKDRDLFLGVIQKTHETKKSDWLI 187
>SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088)
Length = 329
Score = 28.7 bits (61), Expect = 10.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 321 IPQKQVERNSDIYVSVVSYTHQVAAKGWFI 350
+ QK+ E++ D+ SV+ TH+ W I
Sbjct: 132 LTQKETEKDRDLLSSVIQKTHETKKSDWLI 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,303,840
Number of Sequences: 59808
Number of extensions: 598987
Number of successful extensions: 1103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1085
Number of HSP's gapped (non-prelim): 11
length of query: 443
length of database: 16,821,457
effective HSP length: 84
effective length of query: 359
effective length of database: 11,797,585
effective search space: 4235333015
effective search space used: 4235333015
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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