GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001119-TA|BGIBMGA001119-PA|IPR002005|Rab GTPase
activator
         (443 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.            26   1.8  
AY545988-1|AAS99341.1|  423|Anopheles gambiae carboxypeptidase B...    24   9.5  
AJ627286-1|CAF28572.1|  423|Anopheles gambiae carboxypeptidase B...    24   9.5  

>AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.
          Length = 438

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/73 (20%), Positives = 31/73 (42%)

Query: 85  LLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLI 144
           + V  + H     + E  ++E         IS  P+D K+  A    G+  + +  N  +
Sbjct: 85  ITVVYVTHKKQAMFNEIPTVEPDISNSSTNISHRPIDLKDIKARGRFGVVWRAQLGNQEV 144

Query: 145 YVQDFQEEDAKTW 157
            V+ F  ++ ++W
Sbjct: 145 AVKIFPMQERQSW 157


>AY545988-1|AAS99341.1|  423|Anopheles gambiae carboxypeptidase B
           precursor protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 410 FETTCLDVLKIYKHGTGEEFDFSKVKLELGEE 441
           F T CL  L   K G+  EF+   V+ E  E+
Sbjct: 6   FVTGCLLALAFAKAGSYHEFELYNVRPETAEQ 37


>AJ627286-1|CAF28572.1|  423|Anopheles gambiae carboxypeptidase B
           protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 410 FETTCLDVLKIYKHGTGEEFDFSKVKLELGEE 441
           F T CL  L   K G+  EF+   V+ E  E+
Sbjct: 6   FVTGCLLALAFAKAGSYHEFELYNVRPETAEQ 37


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,679
Number of Sequences: 2123
Number of extensions: 18852
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 3
length of query: 443
length of database: 516,269
effective HSP length: 66
effective length of query: 377
effective length of database: 376,151
effective search space: 141808927
effective search space used: 141808927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)