Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001119-TA|BGIBMGA001119-PA|IPR002005|Rab GTPase
activator
(443 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-34|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 615 e-176
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 615 e-176
Z99281-35|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 600 e-172
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 83 4e-16
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 66 4e-11
AF036705-5|AAB95172.1| 544|Caenorhabditis elegans Hypothetical ... 30 2.8
U97007-7|AAB52292.1| 441|Caenorhabditis elegans Hypothetical pr... 29 8.7
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 29 8.7
>Z99281-34|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 615 bits (1519), Expect = e-176
Identities = 291/445 (65%), Positives = 346/445 (77%), Gaps = 4/445 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 60
MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 61 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 118
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 119 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 178
P D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP + MQ +Y+KFGLD
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180
Query: 179 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFA 238
NT DFTGHALALY DD + QP + +I+LYSDSLA+ FA
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFA 240
Query: 239 RLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVI 298
RLSAIYGGTYMLDKP+DEIV+ E+GK +GV+ G+E + KQ+YCDPSY DRV+K GQV+
Sbjct: 241 RLSAIYGGTYMLDKPVDEIVM-ENGKAIGVKCGDEIVRGKQIYCDPSYAKDRVKKTGQVV 299
Query: 299 RCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVE 358
R ICLL+HPI NT DA S QIIIPQKQV R+ DIY+S S T+ V KGW++AMVSTTVE
Sbjct: 300 RAICLLNHPIPNTNDAQSCQIIIPQKQVGRHYDIYISCCSNTNMVTPKGWYLAMVSTTVE 359
Query: 359 TNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVL 418
T +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDATTHFETTC DVL
Sbjct: 360 TANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDATTHFETTCKDVL 419
Query: 419 KIYKHGTGEEFDFSKV-KLELGEED 442
+++ GT +EFDF+ + L L +++
Sbjct: 420 NMFERGTTKEFDFTNITHLSLNDQE 444
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 615 bits (1519), Expect = e-176
Identities = 291/445 (65%), Positives = 346/445 (77%), Gaps = 4/445 (0%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 60
MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 61 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 118
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 119 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 178
P D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP + MQ +Y+KFGLD
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180
Query: 179 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFA 238
NT DFTGHALALY DD + QP + +I+LYSDSLA+ FA
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFA 240
Query: 239 RLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVI 298
RLSAIYGGTYMLDKP+DEIV+ E+GK +GV+ G+E + KQ+YCDPSY DRV+K GQV+
Sbjct: 241 RLSAIYGGTYMLDKPVDEIVM-ENGKAIGVKCGDEIVRGKQIYCDPSYAKDRVKKTGQVV 299
Query: 299 RCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVE 358
R ICLL+HPI NT DA S QIIIPQKQV R+ DIY+S S T+ V KGW++AMVSTTVE
Sbjct: 300 RAICLLNHPIPNTNDAQSCQIIIPQKQVGRHYDIYISCCSNTNMVTPKGWYLAMVSTTVE 359
Query: 359 TNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVL 418
T +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+SYDATTHFETTC DVL
Sbjct: 360 TANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSYDATTHFETTCKDVL 419
Query: 419 KIYKHGTGEEFDFSKV-KLELGEED 442
+++ GT +EFDF+ + L L +++
Sbjct: 420 NMFERGTTKEFDFTNITHLSLNDQE 444
>Z99281-35|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 600 bits (1481), Expect = e-172
Identities = 291/460 (63%), Positives = 346/460 (75%), Gaps = 19/460 (4%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 60
MDEEYD IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 61 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 118
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 119 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 178
P D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP + MQ +Y+KFGLD
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180
Query: 179 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFA 238
NT DFTGHALALY DD + QP + +I+LYSDSLA+ FA
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFA 240
Query: 239 RLSAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKGQVI 298
RLSAIYGGTYMLDKP+DEIV+ E+GK +GV+ G+E + KQ+YCDPSY DRV+K GQV+
Sbjct: 241 RLSAIYGGTYMLDKPVDEIVM-ENGKAIGVKCGDEIVRGKQIYCDPSYAKDRVKKTGQVV 299
Query: 299 RCICLLDHPISNTKDALSTQIIIPQKQVERN---------------SDIYVSVVSYTHQV 343
R ICLL+HPI NT DA S QIIIPQKQV R+ DIY+S S T+ V
Sbjct: 300 RAICLLNHPIPNTNDAQSCQIIIPQKQVGRHYGKFIVLEKQRVAQKRDIYISCCSNTNMV 359
Query: 344 AAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISES 403
KGW++AMVSTTVET +PE+E+ PGL LLGAI +KF+ ++D YEP D GS+SQIFIS+S
Sbjct: 360 TPKGWYLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQS 419
Query: 404 YDATTHFETTCLDVLKIYKHGTGEEFDFSKV-KLELGEED 442
YDATTHFETTC DVL +++ GT +EFDF+ + L L +++
Sbjct: 420 YDATTHFETTCKDVLNMFERGTTKEFDFTNITHLSLNDQE 459
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 83.0 bits (196), Expect = 4e-16
Identities = 77/386 (19%), Positives = 153/386 (39%), Gaps = 19/386 (4%)
Query: 69 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-----YKGGKISKVPVDQK 123
R +++DL+PK L++ G +V+ L + V+ Y EFK + G ++ VP +
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSKG 181
Query: 124 EALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTAN--MQSLYDKFGLDRNTQ 181
E S+ + + EKR F+ + + +D + + A+ ++ G+ + Q
Sbjct: 182 EIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTLQ 241
Query: 182 DFTGHALALYLDDNYLQQPAIQT-IRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFARL 240
F + + + Q+P T + + DS+ F RL
Sbjct: 242 SFIINTIGI-----LQQRPTAMTGMLASCQFMDSVGHFGPSPFLFPLYGCGELSQCFCRL 296
Query: 241 SAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDPSYVPDRVRKKG--QVI 298
+A++G Y L +P+ IV +DGK+ V + + C+ + P +VP+ V ++
Sbjct: 297 AAVFGSLYCLGRPVQAIV-KKDGKITAVIANGDRVNCRYIVMSPRFVPETVPASSTLKIE 355
Query: 299 RCICLLDHPISNTKDALSTQIIIPQKQVERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVE 358
R + D I + T + + + + V V + A KG F+ + T E
Sbjct: 356 RIVYATDKSIKEAEKEQLTLLNLASLRPDAAVSRLVE-VGFEACTAPKGHFLVHATGTQE 414
Query: 359 TNDPESEIRPGLALLGAIRQKF-VSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDV 417
I + + + +S T D + ++ DA H+ + +
Sbjct: 415 GETSVKTIAEKIFEKNEVEPYWKMSFTANSMKFDTAGAENVVVAPPVDANLHYASVVEEC 474
Query: 418 LKIYKHGTGEEFDFSKVKLELGEEDQ 443
+++ T E DF ++ EE++
Sbjct: 475 RQLF-CTTWPELDFLPRAMKKEEEEE 499
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
+ E DV+VLGTGL E IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 5 LPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 66.5 bits (155), Expect = 4e-11
Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 16/224 (7%)
Query: 69 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-----YKGGKISKVPVDQK 123
R +++DL+PK L++ G +V+ L + V+ Y EFK + G ++ VP +
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSKG 181
Query: 124 EALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTAN--MQSLYDKFGLDRNTQ 181
E S+ + + EKR F+ + + +D + + A+ ++ G+ + Q
Sbjct: 182 EIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTLQ 241
Query: 182 DFTGHALALYLDDNYLQQPAIQT-IRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFARL 240
F + + + Q+P T + + DS+ F RL
Sbjct: 242 SFIINTIGI-----LQQRPTAMTGMLASCQFMDSVGHFGPSPFLFPLYGCGELSQCFCRL 296
Query: 241 SAIYGGTYMLDKPIDEIVLGEDGKVVGVRSGNETAKCKQVYCDP 284
+A++G Y L +P+ IV +DGK+ V + + C+ Y +P
Sbjct: 297 AAVFGSLYCLGRPVQAIV-KKDGKITAVIANGDRVNCR--YSNP 337
Score = 57.2 bits (132), Expect = 2e-08
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 1 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
+ E DV+VLGTGL E IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 5 LPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51
>AF036705-5|AAB95172.1| 544|Caenorhabditis elegans Hypothetical
protein F37C4.6 protein.
Length = 544
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 3 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45
+ YD I++G G + L+ +GKKV ++R GG + +
Sbjct: 13 QSYDAIIIGGGHNGLTAAAYLTKAGKKVCVLERRHVVGGAAVT 55
>U97007-7|AAB52292.1| 441|Caenorhabditis elegans Hypothetical
protein ZC196.3 protein.
Length = 441
Score = 28.7 bits (61), Expect = 8.7
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 121 DQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP-STANMQSLYDKFGL 176
++KE +D + K+ + FL Y +DFQ A+ WK F + ++Q Y++ +
Sbjct: 253 EEKEEKVADWIQNCYKQPIKRFLEYFRDFQNV-AREWKYFKRLPSESLQDAYEEISI 308
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 28.7 bits (61), Expect = 8.7
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 14 LKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP 59
LK C+ S +++G K + R + G E ++ +++ F + N P
Sbjct: 1022 LKACVSSSS-NIAGNKKYRVTRMTFQGKEYGTLLQIKDFFNRMNVP 1066
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.137 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,783
Number of Sequences: 27539
Number of extensions: 461530
Number of successful extensions: 1099
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 11
length of query: 443
length of database: 12,573,161
effective HSP length: 84
effective length of query: 359
effective length of database: 10,259,885
effective search space: 3683298715
effective search space used: 3683298715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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