GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001119-TA|BGIBMGA001119-PA|IPR002005|Rab GTPase
activator
         (443 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    27   0.24 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.0  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase
          protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 0.24
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 2  DEEYDVIVLGTGLKECILSGMLS-VSGKKVLHID 34
          D  YD IV+G G    +++G LS VS  KVL ++
Sbjct: 66 DLSYDFIVVGGGAARAVVAGRLSEVSNWKVLLLE 99


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 380 FVSVTDYYEPIDDGSQSQIFISESYDATTHF 410
           F+SV  +Y P D G +  + IS     T  F
Sbjct: 252 FLSVLVFYLPSDSGEKVSLSISILLSLTVFF 282


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,280
Number of Sequences: 429
Number of extensions: 5374
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 443
length of database: 140,377
effective HSP length: 60
effective length of query: 383
effective length of database: 114,637
effective search space: 43905971
effective search space used: 43905971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)