Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001118-TA|BGIBMGA001118-PA|IPR006434|HAD-superfamily
hydrolase, subfamily IE
         (274 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10948| Best HMM Match : UMPH-1 (HMM E-Value=1.3e-26)                98   6e-21
SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21)                94   1e-19
SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)                 29   4.1  
SB_9726| Best HMM Match : PALP (HMM E-Value=1e-19)                     28   9.5  

>SB_10948| Best HMM Match : UMPH-1 (HMM E-Value=1.3e-26)
          Length = 283

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 48/157 (30%), Positives = 99/157 (63%), Gaps = 2/157 (1%)

Query: 118 LLKKGVKELIIWSQTHEVPVLVFSAGLGESVVAALKAANFLLPHVKVVSNFLALDENDKI 177
           +L++GV+ L + +  ++VPV + S GLG+ +   ++  + L  +V +++N++  ++   +
Sbjct: 126 VLREGVEWLFVKTSENKVPVFILSEGLGDLIEEVIRQQSQLYDNVTIMANYMKFNQG-VM 184

Query: 178 VGIKGEVIHTYNKNETAIKNTDYYNLVQQRSNVILMGDNIGDAGMAEGMDHCDVVVKVGF 237
           VGI G+++ + NK E A KN  ++   + RS+ I+MGD+I D+ MA  + + + V+ VG 
Sbjct: 185 VGIHGKLLTSGNKQEQA-KNNLFFEKNKDRSSAIVMGDSIRDSEMASSLRNAENVITVGI 243

Query: 238 LGHSAEGNLPNYKKKFDIVLVNEPSMDIVNAMVKLVL 274
           L    + NL  Y++ FD+V+V++ S+ +V+ ++  +L
Sbjct: 244 LNEKVDENLKAYQEAFDVVIVDDHSISVVDVVLMSLL 280


>SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21)
          Length = 372

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 46/156 (29%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 119 LKKGVKELIIWSQTHEVPVLVFSAGLGESVVAALKAANFLLPHVKVVSNFLALDENDKIV 178
           L+ GV+ L + +    VPV + S GLG+ +   +K  + L  +V V++N++  +E   +V
Sbjct: 215 LRDGVEWLFVKTYEKNVPVFILSGGLGDIIEEVIKQQSHLFDNVTVMANYMKFNEEGVMV 274

Query: 179 GIKGEVIHTYNKNETAIKNTDYYNLVQQRSNVILMGDNIGDAGMAEGMDHCDVVVKVGFL 238
           G++ E+I + NK E   ++  Y+   + R+NV++MGD I D  +   +   + V+ +G L
Sbjct: 275 GLQDELISSNNKREQT-RSHPYFEKHKDRTNVVVMGDLIQDTDVVGSLKAPENVLTIGLL 333

Query: 239 GHSAEGNLPNYKKKFDIVLVNEPSMDIVNAMVKLVL 274
               +  L  YK+ FD+V+V++ S+++V+ ++  +L
Sbjct: 334 NEKVDERLSAYKEAFDVVVVDDHSIEVVDEVLMQLL 369


>SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 228 HCDVVVKVGFLGHSAEGNLPNYKKKFDIVLVNEPSMD 264
           HC  +V++G    +AE   P  + K  +VL N+P  D
Sbjct: 193 HCGSLVQLGNRNRTAERQFPEEEFKNSVVLTNQPLRD 229


>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
          Length = 1477

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/32 (28%), Positives = 22/32 (68%)

Query: 116 HALLKKGVKELIIWSQTHEVPVLVFSAGLGES 147
           + ++KKG+ E + W ++H+   ++  AG+G++
Sbjct: 596 YKMMKKGLSEFLDWIRSHDPNDIIGPAGIGDA 627


>SB_9726| Best HMM Match : PALP (HMM E-Value=1e-19)
          Length = 337

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 102 EEKTKHMVDWYIAAHALLKKGVKELIIWSQTHEVPVLVFSAGLGESVVAALKAANFLLPH 161
           ++K    ++ Y   H L  +G   L I  Q + +  ++   G G  +     A   + PH
Sbjct: 120 DQKGLAYINGYDHPHILSGQGTVGLEIIDQVYPLDAVIVPVGGGGLLAGIAIAVKTIYPH 179

Query: 162 VKVVS 166
           VK+++
Sbjct: 180 VKIIA 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,016,626
Number of Sequences: 59808
Number of extensions: 372655
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 6
length of query: 274
length of database: 16,821,457
effective HSP length: 81
effective length of query: 193
effective length of database: 11,977,009
effective search space: 2311562737
effective search space used: 2311562737
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)