Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001118-TA|BGIBMGA001118-PA|IPR006434|HAD-superfamily
hydrolase, subfamily IE
         (274 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 43  IVTDFDHTLTRHTLDNGKSVLTS 65
           I+ D  H  TRH   NG   L S
Sbjct: 217 ILEDIKHINTRHNTKNGMKTLLS 239


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 144 LGESVVAALKAANFLLPHVK 163
           L   V++ALK   F+  H+K
Sbjct: 443 LSPDVISALKGVRFIAQHIK 462


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 123 VKELIIWSQTHEVPVLVFSAGLGE 146
           +K +I  +   +  VL+ +AG+GE
Sbjct: 99  IKNMITGTSQADCAVLIVAAGIGE 122


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,917
Number of Sequences: 429
Number of extensions: 3436
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 274
length of database: 140,377
effective HSP length: 57
effective length of query: 217
effective length of database: 115,924
effective search space: 25155508
effective search space used: 25155508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)