GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001118-TA|BGIBMGA001118-PA|IPR006434|HAD-superfamily
hydrolase, subfamily IE
         (274 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38680.1 68415.m04750 pyrimidine 5'-nucleotidase family prote...    58   8e-09
At5g45170.1 68418.m05545 CbbY protein-related low similarity to ...    31   1.1  
At3g48530.1 68416.m05299 CBS domain-containing protein low simil...    30   1.5  
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ...    30   1.9  
At4g22840.1 68417.m03298 bile acid:sodium symporter family prote...    29   3.4  
At3g52510.1 68416.m05774 F-box family protein-related contains w...    29   4.5  
At4g29260.1 68417.m04184 acid phosphatase class B family protein...    28   5.9  
At2g25180.1 68415.m03011 two-component responsive regulator fami...    28   5.9  

>At2g38680.1 68415.m04750 pyrimidine 5'-nucleotidase family protein
           / uridine monophosphate hydrolase-1 (UMPH-1) family
           protein similar to pyrimidine 5'-nucleotidase [Homo
           sapiens] GI:11245474; contains Pfam profile PF05822:
           Pyrimidine 5'-nucleotidase (UMPH-1)
          Length = 275

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 16/93 (17%)

Query: 161 HVKVVSNFLALDENDKIVGIKGEVIHTYNKNETA--------------IKNTDYYNL-VQ 205
           +VK+VSN +  +++ ++V  KG++IH  NKNE A              I   D  N+ ++
Sbjct: 184 NVKIVSNRMVFNDDGQLVSFKGKLIHVLNKNEHALDMAAPLHDRLGVDIGEEDEENVNMK 243

Query: 206 QRSNVILMGDNIGDAGMAEGMDHCDVVVKVGFL 238
           +R NV+LMGD++GD  M++G+D+ +  + +GFL
Sbjct: 244 ERRNVLLMGDHLGDLRMSDGLDY-ETRISIGFL 275



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 22/103 (21%)

Query: 78  HYKDEDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHALL------------------ 119
           +Y  +   L   Y P+E  PV+ ++EKTK M +W+   H LL                  
Sbjct: 47  YYDAKRQALYDHYHPLEISPVIPIDEKTKLMEEWWGKTHELLIEGGLTYDAIKKSVANSS 106

Query: 120 ---KKGVKELIIWSQTHEVPVLVFSAGLGESV-VAALKAANFL 158
              ++GV EL  + +  E+PVL+FSAGL + +    LK+ + L
Sbjct: 107 IAFREGVSELFEFLEKKEIPVLIFSAGLADVIEEVTLKSISLL 149


>At5g45170.1 68418.m05545 CbbY protein-related low similarity to
           SP|P40119 CbbY protein, chromosomal {Alcaligenes
           eutrophus}
          Length = 372

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 94  EADPVMTVEEKTKHMVDWYIAAHAL-LKKGVKELIIWSQTHEVPVLVFSAGLGESVVAAL 152
           +A  V +V  + K+ +D ++ + +L L+ GV+E I  +   +VPV + +A        AL
Sbjct: 152 KASFVKSVLREKKNAMDEFLISKSLPLRSGVQEFIDNAYAEKVPVAIVTAYCKSGDKVAL 211

Query: 153 KAANFL----LPHVKVVSN 167
                L    LP+VKV+ +
Sbjct: 212 SIVEMLGQERLPNVKVIGD 230


>At3g48530.1 68416.m05299 CBS domain-containing protein low
           similarity to SP|Q9UGI9 5'-AMP-activated protein kinase,
           gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo
           sapiens}; contains Pfam profile PF00571: CBS domain
          Length = 424

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 47  FDHTLTRHTLDNGKSVLTSFGMFRECPSIPQHYKDEDVR 85
           F H  T   LDNG S +TS G F E  +  + YK+  VR
Sbjct: 143 FSHDFTTDVLDNGDSAVTS-GNFFEVLTSSELYKNTKVR 180


>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
           WD-40 repeats (PF00400);low similarity to
           photomorphogenesis repressor (COP1) GI:2702280
           [Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
           nil]
          Length = 343

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 176 KIVGIKGEVIHTYNKNETAIKNTDYYNLVQQRSNVI 211
           K+   KGEV+ +YNK+ +     D+Y    Q+ +V+
Sbjct: 284 KVSDGKGEVLESYNKHHSLAYGADWYRGKDQKQSVV 319


>At4g22840.1 68417.m03298 bile acid:sodium symporter family protein
           low similarity to SP|Q12908 Ileal sodium/bile acid
           cotransporter {Homo sapiens}; contains Pfam profile
           PF01758: Sodium Bile acid symporter family
          Length = 409

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 147 SVVAALKAANFLLPHVKVVSNFLAL 171
           S+V  +K AN +LPHV + S  LAL
Sbjct: 89  SIVDRMKKANSILPHVVLASTILAL 113


>At3g52510.1 68416.m05774 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain
          Length = 177

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 230 DVVVKVGFLGHSAEGNLPNYKKKFDIVLVNEPSMD 264
           ++ V+ G + HS   NL NY+ K DI   ++ ++D
Sbjct: 69  ELPVEAGIIWHSYRANLVNYRDKLDIFEYSKLAVD 103


>At4g29260.1 68417.m04184 acid phosphatase class B family protein
           similar to acid phosphatase [Glycine max] GI:3341443;
           contains Pfam profile PF03767: HAD superfamily
           (subfamily IIIB) phosphatase
          Length = 255

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 146 ESVVAALKAANFLLPHVKVVSNFLALDENDKIVGIKGEVIHTYNKNETAIKNTDYY 201
           +SV   L    FL  +  +V   LA  ++ +I G  G+ +  ++ +ET + N DYY
Sbjct: 67  DSVAEYLNGDQFLSDYSVIVDYALAFAKSVEISG-DGKDVWIFDIDETLLTNIDYY 121


>At2g25180.1 68415.m03011 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 596

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 64  TSFGMFRECPSIPQHYKDEDVRLASIYKPIEADPVMTVEEKTKHM 108
           T  G F    S+P ++ D    L  +  P+E D + T   K+++M
Sbjct: 334 TDIGKFHHVSSLPLNHSDGGNILQGLPMPLEFDQLQTNNNKSRNM 378


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,547,809
Number of Sequences: 28952
Number of extensions: 277233
Number of successful extensions: 668
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 11
length of query: 274
length of database: 12,070,560
effective HSP length: 80
effective length of query: 194
effective length of database: 9,754,400
effective search space: 1892353600
effective search space used: 1892353600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)