Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001117-TA|BGIBMGA001117-PA|IPR013256|Chromatin SPT2
         (605 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   1.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   4.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   4.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   8.0  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 458 SVPKPKEQTVQKNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQPSSTKVQNG 517
           S P+    +  K+G  G +  TK+   D     G   PE      + K LQ ++    NG
Sbjct: 68  SSPRISSPSSTKSGSPGFLTYTKAD-RDVDLFRGSSTPESPEHYYNQKTLQANNNDASNG 126

Query: 518 PSKPKISNSFDFD 530
             K  I N    D
Sbjct: 127 NLKFSIDNILKAD 139


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 212 PPLDFNQLLKIAEQKKSEPIEISTKKPVQEAEPER 246
           PP D+N     A    S  +++ T   +QE +P+R
Sbjct: 48  PPSDWNCPQYNAPPYMSSVLQLPTVTEIQETQPQR 82


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 212 PPLDFNQLLKIAEQKKSEPIEISTKKPVQEAEPER 246
           PP D+N     A    S  +++ T   +QE +P+R
Sbjct: 39  PPSDWNCPQYNAPPYMSSVLQLPTVTEIQETQPQR 73


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 10/49 (20%), Positives = 25/49 (51%)

Query: 410 KLSENVKKNIDLKSQNTYRIDKNSNEKKPSALSRSGDGKYMNGHVQGKS 458
           ++  N+   +D+  Q+  RID+N+   +   ++   + + +   VQ +S
Sbjct: 316 EIQHNLDVLVDMCEQDIIRIDRNTRFNQDKIVALRQEQETLKSQVQRES 364


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,963
Number of Sequences: 317
Number of extensions: 5006
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 605
length of database: 114,650
effective HSP length: 61
effective length of query: 544
effective length of database: 95,313
effective search space: 51850272
effective search space used: 51850272
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 46 (22.6 bits)