Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001117-TA|BGIBMGA001117-PA|IPR013256|Chromatin SPT2
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 34 0.049
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 33 0.086
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 32 0.20
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 31 0.61
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 30 1.1
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 30 1.1
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 29 1.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 1.4
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 29 1.9
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 2.5
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 29 2.5
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 2.5
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 29 2.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 3.3
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 28 4.3
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 5.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 5.7
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 5.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 5.7
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 7.5
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 27 7.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 7.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 9.9
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 27 9.9
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 27 9.9
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 27 9.9
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 27 9.9
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 9.9
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 34.3 bits (75), Expect = 0.049
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 433 SNEKKPSALSRS-GDGKYMNGHVQGKSVPKPKEQTVQKNGINGKVPLTKSKVGDSRSENG 491
SN P++ S S G G ++N H+ K+ V NG + + ++S S
Sbjct: 136 SNANSPTSESPSKGFGSFINNHILHKNTSSHPSSPV--NGKSSDIHKSQSYQHLKNSPPN 193
Query: 492 KRLPEKD-SKRPDDKRLQPSSTKVQNGPSKPKISNSFDFDKHVNSLGKNGARRPDGTRQY 550
R K +R + STK NG +K +S S + + N R +
Sbjct: 194 SRTARKPVPRRANSASHNLGSTKSPNGNAKESLSRSAELPSKAKPMEINNGYRKKPSPLS 253
Query: 551 PPGDVRRKPQG 561
P +R + G
Sbjct: 254 PNSSIRNREGG 264
Score = 29.5 bits (63), Expect = 1.4
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 431 KNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQTVQKNGINGKV---PLTKSKVGDSR 487
K S + S++ + NG+ + S P + G NG PLT S S
Sbjct: 223 KESLSRSAELPSKAKPMEINNGYRKKPSPLSPNSSIRNREGGNGSYFDGPLTASPTPSSP 282
Query: 488 SENGKRLPEKDSKRPDDKRLQPSSTKVQNGPSKPKISNSFD 528
+ P SK P L + + GPSKP +S D
Sbjct: 283 TGT----PNSMSKSPSLSSLASTGASYRPGPSKPLVSRVRD 319
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 33.5 bits (73), Expect = 0.086
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 13/157 (8%)
Query: 409 TKLSENVKKNIDLKSQNTYRIDKNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQTVQ 468
+K S+ ++ + LKS++ K+S++K+P + + G K + + K V PK
Sbjct: 67 SKKSQKLETSDALKSKS-----KDSSKKEPVVVPKKGTPKIFQENHKVKKVKSPK----- 116
Query: 469 KNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQPSSTKVQNGPSKPKISNSFD 528
K + GK P K D E+ ++L +K S P +++ SS + + + NSF
Sbjct: 117 KEKLVGKNPAEKEDTTD--VEDTQKLEQKHSTTPSSLKMK-SSISLAAITADDSLHNSFS 173
Query: 529 FDKHVNSLGKNGARRPDGTRQYPPGDVRRKPQGKPKR 565
+ + + R G ++ +R+ Q + K+
Sbjct: 174 SNDIDDGFQTVTSSRSYGKKKSTEPLTKRQRQNQQKK 210
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.3 bits (70), Expect = 0.20
Identities = 35/208 (16%), Positives = 83/208 (39%), Gaps = 7/208 (3%)
Query: 95 EDVDRENTAVTLTGPEQPDQDDYGYESQAAAAIYAKMMEKYSKIPEEPKFPSSLKSVKKD 154
EDVD + + +T ++ ++ ++ AA ++++ Y + + + L+ ++++
Sbjct: 521 EDVDEDELDL-MTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEIEEE 579
Query: 155 LNGTRER-VKNALQHEDEPVPHKRRRRTENGEREPSPPSXXXXXXXXXXXXXXXXPAPPP 213
+ER +K + E + K+ + + ER+
Sbjct: 580 NKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARK 639
Query: 214 LDFNQLLKIAEQKKSEPIEISTKKPVQEAEPERPMTKKQKKEYEDXXXXXXXXXXXXXXX 273
Q LK ++KK + +E ++ +E + ++ KK KK+ ++
Sbjct: 640 KREEQRLKREQEKKQQELE---RQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREE 696
Query: 274 KHGGKKVQKEEKVTHKDEKPSERERKPE 301
+ K++ +E K K +K E R+ E
Sbjct: 697 EE--KRILEERKRREKLDKEEEERRRRE 722
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 30.7 bits (66), Expect = 0.61
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 217 NQLLKIAEQKKSEPIE-ISTKKPVQEAEPER---PMTKKQKKEYEDXXXXXXXXXXXXXX 272
+QL ++ K E I IS PVQ E P + + + E+
Sbjct: 48 SQLNRVLMYLKGEEIPLISLNLPVQGPPTEELIIPPEEMLETKEEESLKHAREENDDLHL 107
Query: 273 XKHGGKKVQKEEKVTHKDEKPSERERKPETSGGLG 307
K K+++KE+K + EK R+ K +T+ G+G
Sbjct: 108 DKETKKRLKKEKKKAARREKEEARKAKADTTQGVG 142
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 277 GKKVQKEEKVTHKDEKPSERER-KPETSGGLGRIPKIGDRNSNKNINSKPVEREK 330
G +++ ++ K+E+ S R KP+ L ++PK+ + NK++ SK K
Sbjct: 150 GTSLKRNREIIEKEERSSFHFRVKPKN---LDKVPKLAENEGNKSLESKESNENK 201
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.9 bits (64), Expect = 1.1
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 417 KNIDLKSQNTYRIDKNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQTVQKNGINGKV 476
+NI ++NT +N + P ++ ++G +Q S P + K NG
Sbjct: 152 RNIAQTAENTSLTGQNQGFQNPHFIASDSPSSVLSGRMQNTSSPTNSLRPQLKVQTNG-- 209
Query: 477 PLTKSKVGDSRSENGKRLPEKD-SKRPDDKRLQPSSTKVQNGPSKPKISNSFDFD 530
GD S + +KD +P + ++ S + + NGPS + +N+ FD
Sbjct: 210 ---YETPGDINSAKSYKDIQKDFLLKPKNSFVKTSPSPLANGPSF-RSANASPFD 260
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 448 KYMNGHVQGKSVPKPKEQTVQKNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRL 507
K + H + + V + KE + +G N V + DS+S+ K+ K S++P ++
Sbjct: 19 KNVASHGEKRKVKRKKED-LSMDGSNDGVKDSPDSNDDSQSKKKKKKKLKKSQQPLNEEN 77
Query: 508 QPSSTKVQNGPSKP-KISN 525
P +N KP KIS+
Sbjct: 78 YPRLQTTENNLQKPLKISD 96
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.5 bits (63), Expect = 1.4
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 14/158 (8%)
Query: 406 ADKTKLSENVKKNIDLKSQNTYRIDKNSNEKKPSALSRSGDGKYMNGHV-QGKSVPKPK- 463
A+ K +E+ K Y K+ K+ S +S + N +G + KP
Sbjct: 57 ANAQKKTESTGKITSEADTEKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWRGDNTSKPSA 116
Query: 464 EQTVQKNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQPSST-KVQNG----- 517
+ ++ + P T S++G +N + + K + P ST +Q G
Sbjct: 117 NSSAERTSSQHQKPETSSQIG---KDNAAPVENVNEKSTSQETAPPVSTVPIQFGSITRN 173
Query: 518 ---PSKPKISNSFDFDKHVNSLGKNGARRPDGTRQYPP 552
PSKPK+S + V+S PP
Sbjct: 174 AAIPSKPKVSGNMQNKSGVSSYSSKSQSVNSSVTSNPP 211
Score = 27.9 bits (59), Expect = 4.3
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 225 QKKSEPIEISTKKPVQEAEPERPMTKKQKKEYEDXXXXXXXXXXXXXXXKHGGKKVQKEE 284
QKK+E ST K EA+ E+ + K E G K
Sbjct: 60 QKKTE----STGKITSEADTEKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWRGDNTSKPS 115
Query: 285 KVTHKDEKPSERERKPETSGGLGRIPKIGDRNSNKNINSK 324
E+ S + +KPETS +G+ N N+ S+
Sbjct: 116 -ANSSAERTSSQHQKPETSSQIGKDNAAPVENVNEKSTSQ 154
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 427 YRIDKNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQTVQKNGINGKVPLTKSKVGDS 486
+RID NE + S++ + ++ ++ + P + + + K+P K+GD
Sbjct: 185 HRIDSEHNEPEYHTESKNEESEHNTKSIREE--PIHHVDSKNEEPVYSKIP---EKMGDE 239
Query: 487 RSENGKRLPEKDSKRPDDKRLQPSSTKVQNGPSKPK 522
SEN + K+ + + P+++ PSK K
Sbjct: 240 FSENSLSKSDSAVKQEGNLLIHPNNSLKDTAPSKCK 275
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 70 MRDPKALRKIQKTLKVIKSAN-KSVIEDVDRENTAVTLTGPEQPDQDDYGYESQAAAAIY 128
++D K L + L+ + N K+ IE+ + EN +V T E+ D SQAA
Sbjct: 45 VQDEKELLEFLDQLENDEEKNEKNPIEEANEENESVAATSNERQQHDASNQPSQAAQTTI 104
Query: 129 AKMME 133
K E
Sbjct: 105 NKNTE 109
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 28.7 bits (61), Expect = 2.5
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 472 INGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQPSSTKVQNGPSKPKISN-SFDFD 530
+ K P KSKV S+ E K + ++K K + PSS V PS K +N S D
Sbjct: 505 VKAKAPTKKSKVKPSKQEESKVVVPSNAKAV-KKSVVPSSPVV---PSPRKATNKSLSMD 560
Query: 531 KHVNSLGKNGARRPDGT 547
+ +NG P T
Sbjct: 561 VSKGNAFENGPLLPRPT 577
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 475 KVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQPSSTKVQNGPSKPKIS 524
++ + KSK S+S+ KRL E D++ ++ PS + NG S +S
Sbjct: 285 QIKIKKSKKKKSKSDRRKRLVELDAENENEN--DPSDFVLPNGQSNSDLS 332
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 450 MNGHVQGKSVPKPKEQTVQKNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQP 509
M +V+ +P +V I K + KSK +++EN P S PD+K L+
Sbjct: 1 MEMYVEDVPMPDIGPDSVLNTPIRPKYEILKSKK-KTQNENDPE-PMDISMSPDEKNLKK 58
Query: 510 SSTKVQNGPSKPKISNS 526
S+ + + SKP S++
Sbjct: 59 STVRRKLRKSKPNSSSN 75
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 3.3
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 220 LKIAEQKKSEPIEISTKKPVQEAEPERPMTKKQKKEYEDXXXXXXXXXXXXXXXKHGGKK 279
+K+A++K+ P S P EP +K++ E +
Sbjct: 341 VKVADEKQL-PDASSQATPADSKEP-----RKEEAEKPVTSATEVSSEKVEKVDGNTSSP 394
Query: 280 VQKEEKVTHKDEKPSERERKPETSGGLGRIPKIGDRNSNKNINSKP 325
++EEK + + EKPS ++ ET+G K+G + + K I+ KP
Sbjct: 395 SKEEEKPSTEPEKPSVVTQRKETTG-----TKLGTKLNAKAISFKP 435
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 431 KNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQT 466
KNS+ PS +S S G + H+ P KE+T
Sbjct: 89 KNSSLASPSKISESISGDRLYNHMSSAPSPNKKEET 124
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 5.7
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Query: 420 DLKSQNTYRIDKNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQTVQKNGINGKVPLT 479
DL +T K + EK SA S + + + PKP+ Q P++
Sbjct: 388 DLLDMSTLYESKGTVEKAVSATVPSAGAQVQKHNEEKVETPKPEAQ-----------PVS 436
Query: 480 KSKVGDSRSENGKRLPEKDSKRPDDKRLQPSSTKVQNGPSKPK 522
K K +S E +K SK P+ K PS++KV+ PSK +
Sbjct: 437 KPK--ESAEE------QKPSKEPEVKPTTPSASKVEE-PSKKR 470
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 474 GKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQPSSTKVQNGP-SKPKISNSFDFDKH 532
G +P V S+ E + L + S + LQP+ Q+GP SK + N+
Sbjct: 35 GNLPWVAPDVIQSQIEYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENT--LLPR 92
Query: 533 VNSLGKNGARRPD 545
+N L GAR+P+
Sbjct: 93 LNPLAPIGARQPN 105
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 278 KKVQKEEKVTHKDEKPSERERKPETSGGLGRIPKIGDRNSNKNINSKPVEREKNE 332
KK +K EK ++ SE+++K + + + +G + ++KN N E++E
Sbjct: 59 KKDKKPEKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDE 113
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 474 GKVPLTKSKVGDSRSENGKRLPEKDSKRP-DDKRLQPSSTKVQNGPSK 520
G PLT K + LPE+ S++P DDK Q S+ V +G SK
Sbjct: 697 GATPLTAEKPFTTEKPLSS-LPEEVSRQPTDDKGEQVSNADVDSGLSK 743
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 482 KVGDSRSENGKRLPEKDSKRPDDKRLQPS-STKVQNGPSKPKISNSFDFDKHVNSLGKNG 540
K+ S + + + S D L + S++ NG S DF KH N
Sbjct: 701 KIAQSSMFKNRSIASRQSLETSDVTLDINMSSRHSNGTSSMLFK---DFTKHNNWEASTY 757
Query: 541 ARRPDGTRQYPPGDVRR 557
P TR YP +V +
Sbjct: 758 PSAPKNTRTYPTAEVEK 774
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 72 DPKALRKIQKTLKVIKSANKSVIEDVDRENTA 103
+ K + K+ + +K I S+N S I+D+ ++ A
Sbjct: 560 EKKVVEKVVEVVKYIPSSNSSSIDDIQKDEIA 591
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 214 LDFNQLLKIAEQKKSEPIEISTKKPVQEAEP-ERPMTKKQKKEYED 258
+DF + ++KS P EI K E +P ++ KK +KE +D
Sbjct: 780 VDFLKRNTSLSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDD 825
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 431 KNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQTVQKNGINGKV--PLTKSKVGDSRS 488
K++ + +P+ R + G + ++ PK +K+ N K TKSK S
Sbjct: 1255 KSTRKPRPTKRQRQIMKQVAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSPK 1314
Query: 489 ENGKRLPEKDSK 500
+NG + + ++K
Sbjct: 1315 KNGTNISDANNK 1326
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 115 DDYGYES--QAAAAIYAKMMEKYSKI--PEEPKFPSSLKSVKKDLNGTRERVKNALQHED 170
+D+ YE A+Y +E ++ P ++ + ++ ++ + RE K A + E
Sbjct: 618 EDWLYEEGEDTTKAVYTAKLEDLMRVGGPIRQRYLDAEEAKRQKVQAEREAAKAATKSEA 677
Query: 171 EPVPHKRRRRTENGEREPSPP 191
E + G R P PP
Sbjct: 678 EKQKPSGKFEEGTGGRAPPPP 698
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 9.9
Identities = 21/89 (23%), Positives = 35/89 (39%)
Query: 458 SVPKPKEQTVQKNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQPSSTKVQNG 517
+VP+ E + ++ + + P K + +R + K++P S D L T
Sbjct: 87 AVPQESEIELHESEMVPQKPKKKKRSRRNRKASRKKIPATQSSSADMDTLHVCPTCGSCS 146
Query: 518 PSKPKISNSFDFDKHVNSLGKNGARRPDG 546
SK SN + V K+ PDG
Sbjct: 147 DSKKPQSNKKHRGRRVKHSPKSTLEVPDG 175
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 450 MNGHVQGKS-VPKPKEQTVQKNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKR 506
M G V S V K KE+ Q++ + + K K + EN +R E +R D K+
Sbjct: 308 MGGKVLYHSHVHKSKEEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRKDQKK 365
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 9.9
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 408 KTKLSENVKKNIDLKSQNTYRIDKNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKE--- 464
+T +S++ K +LK N+ ++D S+ K S + +N G V PKE
Sbjct: 333 RTNVSDSTKSE-ELKKINSIKVDNTSSLKCDSYGNTKTKTNQLNCEQIGLEVISPKEFPH 391
Query: 465 -QTVQKNGI--NGKVPLTKSKVGDSRSENGKRLP 495
T +N + N L K+ D E + LP
Sbjct: 392 RTTSSRNSLPNNTTKELEMKKMDDLSHERYENLP 425
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 458 SVPKPKEQTVQKNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKR 506
S PK +Q GI+ + + V SR + KR E S+R K+
Sbjct: 120 STPKSFHSPLQSRGISPSSAQSSAAVSSSRKQKRKRTSEGPSERRARKK 168
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,673
Number of Sequences: 5004
Number of extensions: 105001
Number of successful extensions: 344
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 34
length of query: 605
length of database: 2,362,478
effective HSP length: 77
effective length of query: 528
effective length of database: 1,977,170
effective search space: 1043945760
effective search space used: 1043945760
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -