GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001117-TA|BGIBMGA001117-PA|IPR013256|Chromatin SPT2
         (605 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         30   0.20 
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         30   0.20 
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            29   0.36 
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          28   0.82 
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    27   1.1  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    27   1.9  

>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 428 RIDKNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQTVQKNGINGKVP 477
           +I K+S+EK P AL     G Y +      +VP  KE+   +  +NG++P
Sbjct: 552 KIKKSSSEKNPLALQLMAQGLYNH-----STVPLTKEEEELEMRMNGQIP 596


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 428 RIDKNSNEKKPSALSRSGDGKYMNGHVQGKSVPKPKEQTVQKNGINGKVP 477
           +I K+S+EK P AL     G Y +      +VP  KE+   +  +NG++P
Sbjct: 552 KIKKSSSEKNPLALQLMAQGLYNH-----STVPLTKEEEELEMRMNGQIP 596


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 280 VQKEEKVTHKDEKPSERERKPETSGGLGRIPKIGDRNSNKNINSKPVEREKNERT 334
           +Q+  K   KD KPS+ +   E        P+ G + +  N ++   E E   RT
Sbjct: 79  IQQSGKKPEKDRKPSDEDDDDEGDEANDARPRFGSKAAAANSSATSSESEDERRT 133


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 144 FPSSL-KSVKKDLNGTRERVKNALQHEDEPVPHKRRRRTENGEREPSPPS 192
           +P  L K VKK+++   +  +   + ++E          E+G+RE S PS
Sbjct: 949 YPDGLQKEVKKEVDAAEDDEEEEEEEQEEEEDEDEEGGEEHGQREASAPS 998


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 215 DFNQLLKIAEQKKSEPIEISTKKPVQEAE--PERPMTKK 251
           + ++L K  +QK ++ IE+ T +P + AE  P  P T+K
Sbjct: 86  EMSELKKQLKQKSTQEIEVQTAQPSELAEDAPFVPQTRK 124


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 17/69 (24%), Positives = 27/69 (39%)

Query: 459 VPKPKEQTVQKNGINGKVPLTKSKVGDSRSENGKRLPEKDSKRPDDKRLQPSSTKVQNGP 518
           VP    + +  N IN  + ++KSK G + + + +  P      PD  R         NG 
Sbjct: 369 VPNDLLKELAANKINYGIKISKSKFGAALAAHSQMQPNSGGSSPDSIRHMQGRPGGCNGL 428

Query: 519 SKPKISNSF 527
                +N F
Sbjct: 429 HSTTATNRF 437


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.307    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,428
Number of Sequences: 2123
Number of extensions: 19838
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 9
length of query: 605
length of database: 516,269
effective HSP length: 68
effective length of query: 537
effective length of database: 371,905
effective search space: 199712985
effective search space used: 199712985
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 51 (24.6 bits)