Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001116-TA|BGIBMGA001116-PA|undefined
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.33 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    31   0.33 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    31   0.44 
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   4.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   5.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   7.1  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    27   7.1  

>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 164 PSDNRGKNSHRRSGEVRLPADIIDQIKNHIYSIVHTHRLKDFIRLDKIAGLEINISKMWK 223
           P  + G NS+   GE ++ +   ++I++++ S++  H  KD + L K     +   K+  
Sbjct: 271 PVGSDGSNSNFNGGEEQMDSKDQEEIQDYLNSLLSVHE-KDGVLLQKFHNSYVQYQKLAV 329

Query: 224 DYIK--SYDPDNLSATLPKSKRNIE-VMQTET 252
              K  ++D D L   +  +K++ E ++QT T
Sbjct: 330 ALSKYENFDADKLFQQMNLAKQSNETLLQTLT 361


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 229 YDPDNLSATLPKSKRNIEVMQTETYHPQPTPP---QEAFAPLSYPGSGHLVNIAENY 282
           Y PD     L KSK N  + Q        TPP     A+ P   PGS  ++N    Y
Sbjct: 568 YAPDRCEQELQKSKSNSPIQQNVPLQQFITPPFSYPVAYCPAIPPGSDPILNFGIQY 624


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 252 TYHPQPTPPQ-EAFAPLSYPGSGHLVNIAENYFQNQYQTATLTPAT 296
           TYHPQP PPQ +    LS      + NI   Y  N  Q    +P T
Sbjct: 451 TYHPQPIPPQLQQVQLLSQMAGNQMANI--QYTMNGMQQTGASPNT 494


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 390 NGAALAAIKTRLGMYYAESDAARKKAKQVRSTDTTQSQSP 429
           +G  L   K++L +Y +     RK+A QV ST  T+S SP
Sbjct: 303 DGYDLQPTKSQLELYQS---ILRKRANQVSSTSLTKSSSP 339


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 254 HPQPTPPQEAFAPL-SYPGSGHLVNIAENYFQNQYQTATLTPATNFYQTPNGG-QGMGIL 311
           H   TPPQ  ++ + S P       I    F  Q Q+     A +     NG  Q +   
Sbjct: 208 HSSLTPPQSGYSSMPSLPYLQQPFQIPSQRFSRQQQSHPFPAAQH---AVNGQPQALYPF 264

Query: 312 LXXXXXXXXXXXXAYIVLQAKAEPDQNSALAIDNTPMN---QNSNLSQAVN 359
           +                 Q+ A PD N+AL +DNT  N     S+ S  VN
Sbjct: 265 IYQSRNVPMGSTMFASSNQSAAHPDGNNALPMDNTHANISYMQSSQSMPVN 315


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 382 NNIFHDEINGAALAAIKTRLGMYYAESDAARKK-AKQVRSTDTTQSQSPPEQLTQLGQAV 440
           N + HD     +  + K  + ++ AE++AAR+K  +Q+ S    + Q   E L  L   +
Sbjct: 567 NLVGHDTKTNRSSLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGM 626

Query: 441 TNVTIYT 447
            N TI T
Sbjct: 627 YN-TINT 632


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 179 VRLPADIIDQIKNHIYSIVHTHRLKDFIRLDKIAGLE 215
           V LP+D+ ++I NH+   +    L ++++L  I  LE
Sbjct: 419 VNLPSDLYEKITNHMALAMEVEPLNEWLQLIHILLLE 455


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,389
Number of Sequences: 5004
Number of extensions: 74251
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 7
length of query: 450
length of database: 2,362,478
effective HSP length: 75
effective length of query: 375
effective length of database: 1,987,178
effective search space: 745191750
effective search space used: 745191750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)