Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001116-TA|BGIBMGA001116-PA|undefined
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0737 + 22662657-22662733,22662843-22662930,22663873-226639...    29   7.6  

>12_02_0737 +
           22662657-22662733,22662843-22662930,22663873-22663925,
           22664067-22664542,22664645-22664805,22664889-22665086,
           22665324-22665531,22665632-22665756,22665897-22666080,
           22666184-22666344
          Length = 576

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 376 VKQWRYNNIFHDEINGAALAAIKTRLGMYYAESDAARK 413
           +K+   + +FHD +  + ++ +K  L +YY +  A RK
Sbjct: 248 LKKISKDGVFHDALKQSGISNVKEFLRLYYTDEPALRK 285


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,771,540
Number of Sequences: 37544
Number of extensions: 467670
Number of successful extensions: 1043
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 1
length of query: 450
length of database: 14,793,348
effective HSP length: 84
effective length of query: 366
effective length of database: 11,639,652
effective search space: 4260112632
effective search space used: 4260112632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)