Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001116-TA|BGIBMGA001116-PA|undefined
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25622| Best HMM Match : Phage_Treg (HMM E-Value=2.1)                35   0.15 
SB_963| Best HMM Match : CUB (HMM E-Value=1.8e-19)                     29   5.8  
SB_19092| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  

>SB_25622| Best HMM Match : Phage_Treg (HMM E-Value=2.1)
          Length = 329

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 93  QNAYLFGLMRQVDXXXXXXXXXXXX-TCTFEYFVRVKGRETQVCQTAFKNIHAVSERKV- 150
           QN+YL G +   +               T  Y++   G   +VC+  F  IH V   +V 
Sbjct: 7   QNSYLCGSIETTEVQKRYSKNDNSGRNFTRHYYLNFDGVSIRVCKKVFLAIHGVPYGRVS 66

Query: 151 RVLCKKMDDGIMFPSDNRGKNSHRRSGEVRLPADIIDQIKNHIYSI 196
           R + K  + G    SD RGK+        ++P + I   K+HI S+
Sbjct: 67  RAVIKLQEKGTP-ESDKRGKHEPAN----KIPEENIRLFKSHIESM 107


>SB_963| Best HMM Match : CUB (HMM E-Value=1.8e-19)
          Length = 507

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 75  DVRLRTFQGFYSMKTHDEQNAYLFG 99
           ++R R F+GFY  K H +  A LFG
Sbjct: 389 ELRFRDFKGFYRRKQHLKHTARLFG 413


>SB_19092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 26 NPEEWHKQKQKRLRI-AGLEY--INVNGKVVPQKKPGPDCNCRRRC 68
          N +   K    ++++ AG+E   ++ +GKVVP+ +PG  C CR  C
Sbjct: 26 NKDIQEKSSVAKMQVFAGVEVKIVDTDGKVVPRGQPGEIC-CRSEC 70


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 254 HPQPTPPQEAFAPL 267
           HPQP+PP E F PL
Sbjct: 375 HPQPSPPPEKFGPL 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,422
Number of Sequences: 59808
Number of extensions: 540817
Number of successful extensions: 1146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 4
length of query: 450
length of database: 16,821,457
effective HSP length: 84
effective length of query: 366
effective length of database: 11,797,585
effective search space: 4317916110
effective search space used: 4317916110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)