GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001116-TA|BGIBMGA001116-PA|undefined
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai...    31   1.2  
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05...    31   1.2  
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase...    31   2.1  
At3g49840.1 68416.m05449 proline-rich family protein contains pr...    29   4.8  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    29   6.3  
At2g03380.1 68415.m00297 pentatricopeptide (PPR) repeat-containi...    29   6.3  
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    29   6.3  

>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
           domain-containing protein similar to BRCA1-associated
           protein 2 [Homo sapiens] GI:3252872; contains Pfam
           profile PF02148: Zn-finger in ubiquitin-hydrolases and
           other protein
          Length = 488

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 382 NNIFHDEINGAALAAIKTRLGMYYAESDAARKKAKQVRSTDTTQSQSPPEQLTQLGQAVT 441
           N I   E   + +  + T+L     E D  RKKAK++   +     S  E +T L + + 
Sbjct: 382 NKIEKCEEEKSGITEVNTKL---IKEQDTWRKKAKEIEEREAALLGSKDEMITDLQEQIR 438

Query: 442 NVTIY 446
           ++T++
Sbjct: 439 DITVF 443


>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1131

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 375 LVKQWRYNNIFHDEINGAALAAIKTRLGMYYAESDAARKKAKQVR 419
           + ++ +Y       IN   +AA K RLG+  AE   AR + +QVR
Sbjct: 180 MARESKYKERVRASINQKRVAAEKKRLGLLEAEKKKARARVQQVR 224


>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase (PG1) GI:5669846,
           (PG2) GI:5669848 [Glycine max]; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 470

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 32  KQKQKRLRIAGLEYINVNGKVVPQKKPGPDCNCRRRCFQKVPEDVRLRTFQGFYSMKTHD 91
           K + + + I+G++Y N+ G    Q      C+    C      D+RLR   G   ++TH 
Sbjct: 363 KNQTRAVSISGVKYNNIVGSFTVQPVRIA-CSNNVPCMDVDLMDIRLRPSGGIRGLQTHQ 421

Query: 92  EQNA 95
           +Q A
Sbjct: 422 QQQA 425


>At3g49840.1 68416.m05449 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 606

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 225 YIKSYDPDNLSATLPKSKRNIEVMQTETYHPQPT--PPQEAFAPLSYPGSGHLVNIAENY 282
           Y +   P + S T  K K + +  Q     P P   PP+E + P  YP           Y
Sbjct: 465 YKERNKPSDKSITEKKKKMSYQDPQHPVSAPPPQGYPPKEGYPPAGYPPPA-------GY 517

Query: 283 FQNQYQTATLTPATNFYQTPNGGQGMG 309
              QY  A   PA   Y  P  G G G
Sbjct: 518 PPPQYPQAGYPPAG--YPPPQQGYGQG 542


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 1192

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 222 WKDYIKSYDPDNLSATLPKSKRNIEVMQTETYHPQPTPPQEAFA 265
           WKDY K  D   +  T+    R  E  +T+  +    PP+ A A
Sbjct: 368 WKDYCKQLDQHRIQTTMQSRIRVYESGRTDQGYDPDLPPELAAA 411


>At2g03380.1 68415.m00297 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 689

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 251 ETYHPQPTPPQEAFAP-LSYPGSGHLVNIAENYFQNQYQTATLTPATNFY 299
           E    Q  P +  F   LS  G   +VN  + YF + Y+    TP+T  Y
Sbjct: 536 EMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHY 585


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 161 IMFPSDNRGKNSHRRSGEVRLP-------ADIIDQIKNHIYSIVHTHRLKDFIRLDKIAG 213
           I+FPS    ++S+ R  + RL         D+ D+ K  I + +  H L DF+ ++    
Sbjct: 111 IIFPSHASRRSSNARIAKQRLKMILFSDRCDVSDEAKRKIVNNI-IHALSDFVEIESEEK 169

Query: 214 LEINIS 219
           +++N+S
Sbjct: 170 VQLNVS 175


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,584,455
Number of Sequences: 28952
Number of extensions: 381379
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 7
length of query: 450
length of database: 12,070,560
effective HSP length: 83
effective length of query: 367
effective length of database: 9,667,544
effective search space: 3547988648
effective search space used: 3547988648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)