Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001115-TA|BGIBMGA001115-PA|IPR001173|Glycosyl
transferase, family 2
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48687| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)                   36   0.062
SB_11536| Best HMM Match : 3H (HMM E-Value=6)                          34   0.19 
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_45080| Best HMM Match : DAGAT (HMM E-Value=0)                       29   7.1  
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            28   9.4  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_48687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 21/27 (77%), Positives = 24/27 (88%)

Query: 271 AFDVELLYIAQKLNIPISEIPVRWTEI 297
           AFDVELLYIAQ+L IPI+E+ V WTEI
Sbjct: 14  AFDVELLYIAQQLQIPIAEVAVNWTEI 40


>SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)
          Length = 389

 Score = 35.5 bits (78), Expect = 0.062
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 104 YKYEIIIVSDGSKDSTVKVAESYSIKYGSDKV 135
           + YEIII+ DGS D T + A+     YG DK+
Sbjct: 239 HDYEIIIIDDGSPDGTQEAAKQLEDIYGKDKI 270


>SB_11536| Best HMM Match : 3H (HMM E-Value=6)
          Length = 171

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 75  PAYNEEKRLPPMLDETIEFLENRQKENPSYKYEIIIVSDGSKDSTVKVAESYSI--KYGS 132
           P YNE   +  +L+  +        E P  K EI ++ D + +S +  A+      K G 
Sbjct: 61  PVYNELYVMERLLNNIVNI------EYPKDKLEIQVLDDSTDESVISTAKQIERLQKTGI 114

Query: 133 DKVKCLELIKNRG-KGGAVRLGIQSSRGATILFADAD 168
           D +K ++     G K GA++ G++ ++G  I   DAD
Sbjct: 115 D-IKHIQRENRIGFKAGALKEGLEKAKGEFIAIFDAD 150


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 152 LGIQSSRGATILFADADG----ASKFEDLTKLEVALKDIVKCDPLKDVKTTSESLGIVIG 207
           L I+S+RG  + F  A      ASKF+ +T       +  + DP K  K+   ++   + 
Sbjct: 278 LRIKSTRGDLLTFIHAKIYLVLASKFKQVTVHIKKRTEAQESDPKKQCKSGRRTIHTAVS 337

Query: 208 SRAHLE----KESLAKRNIFRNILMYGFHFLVWLFTVKGIK 244
           + A L+     +S     ++RN+ + G H +V +FTV  IK
Sbjct: 338 NMAQLKIAIIGQSQFGLEVYRNLRIKG-HEIVGVFTVPDIK 377


>SB_45080| Best HMM Match : DAGAT (HMM E-Value=0)
          Length = 337

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 94  LENRQKENPSYKYEIIIVSDGSKDSTVKVAESYSIKYGSDKVKCLELI 141
           +E  + ENPS + E+  V D  +D  VK+ E    KYG  K   LE++
Sbjct: 291 IEVEKNENPS-RDEVQRVHDLYEDKLVKLFEDNKEKYGLKKEDKLEIL 337


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 79  EEKRLPPMLDETIEFLENRQKENPSYKYEIIIVSDGSKDSTVKV-AESYSIKYGSDKVKC 137
           E+KRL   + + ++F+E    + P  +Y  I+    SKD TV + A S      +   + 
Sbjct: 469 EDKRLAIHVKDGLKFIEEAHIKVPRPQYHAIMFDIDSKDVTVGMSAPSKDFVTPALLTRV 528

Query: 138 LELIKNRG 145
            EL+ N G
Sbjct: 529 KELLHNEG 536


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 30/147 (20%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 40  ERYKDEETYNDYLTNTKLRFPSIXXXXXXXXXXXXPAYNEEKRLPPMLDETIEFLENRQK 99
           E   +++ + D   +  +R  S+            P   ++  L  ++D  I  ++   +
Sbjct: 380 EEEDEQKLWRDLCLDRIIR--SVESSLVVLNILTSPNIPKQLYLEEVMDRIIRLIKFHLQ 437

Query: 100 ENPSYKYEIIIVSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKGGAVRLG----IQ 155
            N   +Y+ +     +KD+++ V +S   K  + K+K L +  N+      +LG    +Q
Sbjct: 438 NNIFPEYDPVYRDPDAKDNSIFVPKSKRSKACAPKMKMLTVFYNKVCELISQLGDLVDVQ 497

Query: 156 SSRGATILFADADGASKF--EDLTKLE 180
           +    TIL     G S F  E+++ L+
Sbjct: 498 ALTDTTILQVSTLGVSPFFVENISDLQ 524


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,726,487
Number of Sequences: 59808
Number of extensions: 361565
Number of successful extensions: 840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 7
length of query: 335
length of database: 16,821,457
effective HSP length: 82
effective length of query: 253
effective length of database: 11,917,201
effective search space: 3015051853
effective search space used: 3015051853
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)