GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001115-TA|BGIBMGA001115-PA|IPR001173|Glycosyl
transferase, family 2
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...   194   1e-50
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    63   6e-11
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    33   0.057
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    28   1.6  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    27   5.0  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    26   8.7  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   8.7  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   8.7  

>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score =  194 bits (474), Expect = 1e-50
 Identities = 110/264 (41%), Positives = 157/264 (59%), Gaps = 18/264 (6%)

Query: 75  PAYNEEKRLPPMLDETIEFLENRQKENPSY---KYEIIIVSDGSKDSTVKVAESYSIKYG 131
           PAYNE KR+  ML ET++ LE   + + S    ++EI+IV D SKD+TV     +S K  
Sbjct: 69  PAYNESKRIGNMLQETVDHLEKYYRSSSSAGQRRWEILIVDDESKDTTVNAVLEFSNKLD 128

Query: 132 -SDKVKCLELIKNRGKGGAVRLGIQSSRGATILFADADGASKFEDLTKLEVALKDIVKCD 190
             D ++   L +NRGKGGAV  G+  +RG   +FADADGAS+F DL   E+  K++    
Sbjct: 129 LRDHLRVCSLKRNRGKGGAVTWGMLYARGQYAIFADADGASQFSDL---ELLFKNM---- 181

Query: 191 PLKDVKTTSESLGIVIGSRAHL-EKESLAKRNIFRNILMYGFHFLVWLFTVKGIKDTQCG 249
                       G+V+GSRAH+    ++ KR+  RN LM+ FH L+ +  ++ I DTQCG
Sbjct: 182 ------PPGPRGGVVVGSRAHMVNTAAVVKRSFIRNFLMHCFHKLLQILGIREIGDTQCG 235

Query: 250 FKLFTRKAARICFESLHVNRWAFDVELLYIAQKLNIPISEIPVRWTEIEGSKVTPVVAWI 309
           FKLF+R+A +  F  +HV  W FD+E+L +A+   +PI E+P+ W E+ GSK+T +   I
Sbjct: 236 FKLFSREAYQSIFPRMHVEGWIFDIEVLTLARFFGLPIIEVPITWHEVGGSKMTLLKDSI 295

Query: 310 QMGCDLGLIWLKYRIGAWKIKSEK 333
            M  DL +I L Y  G W+  S K
Sbjct: 296 SMAIDLLVIRLNYTFGIWERPSAK 319


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 20/222 (9%)

Query: 75  PAYNEEKRLPPMLDETIEFLENRQKENPSYKYEIIIVSDGSKDSTVKVAESYSIKYGSDK 134
           P YNE K LP      I +L  +  +     +EI+I+ D S D T +VA+     YG DK
Sbjct: 9   PTYNERKNLP-----IITYLIAKTFDQEKLDWEIVIIDDASPDGTQEVAKELQKIYGEDK 63

Query: 135 VKCLELIKNRGKGGAVRLGIQSSRGATILFADADGASKFEDLTKLEVALKDIVKCDPLKD 194
           +         G G A   G++ + G  ++  DAD    F    K    L + +K      
Sbjct: 64  ILLKPRSGKLGLGTAYIHGLKFATGDFVIIMDAD----FSHHPKY---LPEFIKLQK--- 113

Query: 195 VKTTSESLGIVIGSRAHLEKESLAKRNIFRNILMYGFHFLVWLFTVKGIKDTQCGFKLFT 254
                 +  IV+G+R + +   +   N+ R  +  G + L       G+ D    F+L+ 
Sbjct: 114 ----EHNYDIVLGTR-YAKDGGVYGWNLKRKFISRGANLLASTVLGTGVSDVTGSFRLYK 168

Query: 255 RKAARICFESLHVNRWAFDVELLYIAQKLNIPISEIPVRWTE 296
           +         +    + F +E++  A++ N  I E+P+ + +
Sbjct: 169 KPVLETLMSEVTSKGYVFQMEIIARAREHNYTIGEVPIAFVD 210


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 154 IQSSRGATILFADADGASKFEDLTKLEVALKDIVKCDPLKDVKTTSESLGIVIGSRAHLE 213
           IQ+ +G  IL    DGA+  + L+ L  A K +V     +DV+    +  +VI + + L 
Sbjct: 48  IQTGKGEVIL--TNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLA 105

Query: 214 -KESLAKRNIFRNILMYGFHFLVWLFTVKGIKDTQCGFKLFTRKA 257
             E L K+ I   ++   F      FTV  +K+     +L  R++
Sbjct: 106 CAEKLLKKGIHPTVIAESFQRAAG-FTVDCMKENALAIELSDRES 149


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/27 (40%), Positives = 21/27 (77%)

Query: 273 DVELLYIAQKLNIPISEIPVRWTEIEG 299
           D +L+ IA+KLNI ++++ +RW+  +G
Sbjct: 206 DEKLVPIAKKLNISVAQLLIRWSLQKG 232


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 149 AVRLGIQSSRGATILFADADGASKFEDLTKLEVALKDIVKCD 190
           +V+  I+  R   ++    D    + DL+K  V+ +D+VKC+
Sbjct: 58  SVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCE 99


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 85  PMLDETIEFLENRQKENPSYKYEIIIVSDGSKDSTV-KVAESYSI 128
           P+L +T+E L+ + KE  +Y Y         +D TV ++   +S+
Sbjct: 159 PVLKQTLELLKKKWKEEKNYAYICDQFKSLRQDLTVQRIQNEFSV 203


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 212 LEKESLAKRNIFRNILMYG 230
           L+  S AKR + RNIL+YG
Sbjct: 29  LKDHSKAKRTLCRNILLYG 47


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 93  FLENRQKENPSYKYEIIIVSDGSKDSTVKVAESYSIKYGSDKVKCLEL 140
           F +N +   P+ K+E   V+DG+K  T+  +E   +   +D  K L++
Sbjct: 8   FFQNEKAFTPAGKHEK--VADGNKHETLATSEYPKVCASNDLYKILQI 53


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,202
Number of Sequences: 5004
Number of extensions: 54230
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 9
length of query: 335
length of database: 2,362,478
effective HSP length: 73
effective length of query: 262
effective length of database: 1,997,186
effective search space: 523262732
effective search space used: 523262732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)