GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001115-TA|BGIBMGA001115-PA|IPR001173|Glycosyl
transferase, family 2
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...   230   1e-60
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...    60   2e-09
10_07_0046 - 12338705-12339187                                         31   1.7  
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522...    29   5.3  
09_04_0335 + 16791874-16792178,16792234-16792957                       28   9.2  
02_01_0770 - 5745149-5745366,5745569-5745614,5745695-5745802,574...    28   9.2  

>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score =  230 bits (562), Expect = 1e-60
 Identities = 123/261 (47%), Positives = 159/261 (60%), Gaps = 6/261 (2%)

Query: 48  YNDYLTNTKLRFPSIXXXXXXXXXXXXPAYNEEKRLPPMLDETIEFLENRQKENPSYKYE 107
           + D  +  K+R PSI            PAYNEE RLP  L ET+ +L+ R     S+ YE
Sbjct: 92  FEDPNSLNKVRCPSIYDPAEKYISLIIPAYNEEHRLPEALTETLNYLKQRSAVEKSFTYE 151

Query: 108 IIIVSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKGGAVRLGIQSSRGATILFADA 167
           ++IV DGS D T KVA  +  K+  D V+ L L +N GKG AVR G+  SRG  +L  DA
Sbjct: 152 VLIVDDGSTDHTSKVAFEFVRKHKIDNVRVLLLGRNHGKGEAVRKGMLHSRGELLLMLDA 211

Query: 168 DGASKFEDLTKLEVALKDIVKC--DPLKDVKTTSESLG----IVIGSRAHLEKESLAKRN 221
           DGA+K  DL KLE  ++ + K     L    + S+ L      V GSRAHLEK++LA R 
Sbjct: 212 DGATKVTDLEKLEAQVRALAKKAESSLAPSSSPSQRLSDAEIAVFGSRAHLEKQALATRK 271

Query: 222 IFRNILMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVELLYIAQ 281
            +RN LM GFH +V L    GI+DTQCGFK+FTR AAR  F ++ + RW FDVEL+Y+ +
Sbjct: 272 WYRNFLMKGFHLVVLLTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCK 331

Query: 282 KLNIPISEIPVRWTEIEGSKV 302
            L IP++E+ V WTEI GSKV
Sbjct: 332 HLRIPMAEVSVNWTEIPGSKV 352


>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 2/200 (1%)

Query: 99  KENPSYKYEIIIVSDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKGGAVRLGIQSSR 158
           K  P   +EII+V DGS D T  + +     YG ++V      +  G G A   G++ + 
Sbjct: 34  KHLPDVNFEIIVVDDGSPDGTQDIVKQLQQIYGENRVLLRARPRKLGLGTAYLHGLKHAS 93

Query: 159 GATILFADADGASKFEDLTK-LEVALKDIVKCDP-LKDVKTTSESLGIVIGSRAHLEKES 216
           G  ++  DAD +    ++++ LE +   +        D K   E+   V+    +++   
Sbjct: 94  GDFVVIMDADLSHHMLEISETLEQSPLQLDSYQGYYTDKKKQKETGADVVTGTRYVQNGG 153

Query: 217 LAKRNIFRNILMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVEL 276
           +   N+ R +   G + L       G  D    F+L+ R        S     + F +E+
Sbjct: 154 VHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDLISSCVSKGYVFQMEM 213

Query: 277 LYIAQKLNIPISEIPVRWTE 296
           +  A +    I E+P+ + +
Sbjct: 214 IVRATRKGYHIEEVPITFVD 233


>10_07_0046 - 12338705-12339187
          Length = 160

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 80  EKRLPPMLDETIEFL-ENRQKENPSYKYEIIIVSDGSKDSTVKVA-ESYSIKYGSDKVKC 137
           +K+LPP+ D+    L   +  E P+    I +V  G KD+ +K+A E YS K  SD   C
Sbjct: 77  KKQLPPLADKGSSVLCYTKDTELPA----ITLVFAG-KDAAMKLAPEHYSYKR-SDGAVC 130

Query: 138 LELIKNRGKGGAVRLG 153
           L ++++   GG   +G
Sbjct: 131 LSILRSPLHGGVFVIG 146


>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
            5222445-5222793,5223189-5223510,5223621-5224123,
            5224486-5224578,5224708-5224759,5224837-5225129,
            5225208-5225630,5225734-5226070,5226185-5226220,
            5226272-5226589,5227465-5228450
          Length = 1637

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 34   DTYPVVERYKDEETYND 50
            ++YP VERY D + YND
Sbjct: 1409 ESYPEVERYSDNDIYND 1425


>09_04_0335 + 16791874-16792178,16792234-16792957
          Length = 342

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 285 IPISEIPVRWTEIEGSKVTPVVAWIQMGCDL-GLIW-LKYRIG 325
           + +SE  +R+ EI+G   TP V    +  DL G +W + YR+G
Sbjct: 189 VKVSEGKLRYVEIDGFPDTPAVTMTTL-IDLDGAVWNMDYRVG 230


>02_01_0770 -
           5745149-5745366,5745569-5745614,5745695-5745802,
           5745887-5745946,5746097-5746178,5746960-5747062,
           5747140-5747245,5747612-5747740,5747932-5748030
          Length = 316

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 310 QMGCDLGLIWLKYRIGAWKIKSEK 333
           + GCDLGL WLK R+G ++ + E+
Sbjct: 288 EAGCDLGLRWLK-RLGDYEKQQEQ 310


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,473,710
Number of Sequences: 37544
Number of extensions: 316649
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 6
length of query: 335
length of database: 14,793,348
effective HSP length: 82
effective length of query: 253
effective length of database: 11,714,740
effective search space: 2963829220
effective search space used: 2963829220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)