GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001115-TA|BGIBMGA001115-PA|IPR001173|Glycosyl
transferase, family 2
         (335 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.7  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   5.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   5.0  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   8.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 112 SDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKG 147
           +D S  + V +   +S+ YG   ++C E + NR  G
Sbjct: 689 ADLSSYNCVPINVQFSVLYGFVIIECQEPVTNRPTG 724


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 77  YNEEKRLPPMLDETIEFLENRQKENPSYKYE 107
           YNE+++L         +  +R++E  SYK E
Sbjct: 23  YNEKEKLLEERTSRKRYSRSREREQKSYKNE 53


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 77  YNEEKRLPPMLDETIEFLENRQKENPSYKYE 107
           +NE+K+L         +  +R++E  SYK E
Sbjct: 256 HNEKKKLLEERTSRKRYSRSREREQKSYKNE 286


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 161 TILFADADGASKFEDLTKLEVALKDIVKCDPLKDVKTTSESLGIVIGSRAHLEK 214
           +ILF  +   +  E LT   + + DI   D  +DV    E      G R  ++K
Sbjct: 388 SILFVSSPFLNGLEGLTGRGLFISDIPLHDATRDVILVGEQARAQDGLRRRMDK 441


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 112 SDGSKDSTVKVAESYSIKYGSDKVKCLELIKNRGKGGAVRLGIQSSRGATILFADAD 168
           S  S + + ++ +   I  G+++ +C E +      G    GI  +   +I+  D D
Sbjct: 7   SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVD 63


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,159
Number of Sequences: 429
Number of extensions: 3483
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 5
length of query: 335
length of database: 140,377
effective HSP length: 58
effective length of query: 277
effective length of database: 115,495
effective search space: 31992115
effective search space used: 31992115
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)