Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001114-TA|BGIBMGA001114-PA|undefined
(83 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039712-1|AAK21402.2| 239|Caenorhabditis elegans 2 (zwei) ig-d... 29 0.31
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein. 28 0.71
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ... 28 0.71
Z83318-4|CAB05900.1| 145|Caenorhabditis elegans Hypothetical pr... 28 0.94
Z81077-15|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 27 2.2
Z75952-6|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 27 2.2
AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical ... 27 2.2
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 27 2.2
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 27 2.2
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 27 2.2
Z22176-3|CAA80132.1| 305|Caenorhabditis elegans Hypothetical pr... 26 3.8
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 3.8
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 25 5.0
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 25 5.0
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 25 5.0
AF016445-11|AAC69054.1| 248|Caenorhabditis elegans Hypothetical... 25 5.0
U39674-1|AAA80413.2| 137|Caenorhabditis elegans Hypothetical pr... 25 6.6
AL132860-27|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 25 6.6
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 25 8.8
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 25 8.8
>AF039712-1|AAK21402.2| 239|Caenorhabditis elegans 2 (zwei)
ig-domain protein protein7 protein.
Length = 239
Score = 29.5 bits (63), Expect = 0.31
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 11 DVTSADVTLFKNIAFVSTPSSEVGS 35
D +SA++T+ N+A V +P S VG+
Sbjct: 17 DFSSAEITVISNLAVVGSPESHVGT 41
>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
Length = 1110
Score = 28.3 bits (60), Expect = 0.71
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 1 MSHHQESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQ-QPGDQITVSAEEDYPLA 59
M ++SNNR + S D+ + VS + + A QQ QP + ED P+
Sbjct: 1016 MRAQEDSNNRILLSLDIPAPSAVTGVSGSITHADNSALQLQQEQPTSSFSSWFPEDDPIY 1075
Query: 60 SADEPVP 66
+ P P
Sbjct: 1076 ALPPPPP 1082
>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
protein Y47D3A.6a protein.
Length = 1109
Score = 28.3 bits (60), Expect = 0.71
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 1 MSHHQESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQ-QPGDQITVSAEEDYPLA 59
M ++SNNR + S D+ + VS + + A QQ QP + ED P+
Sbjct: 1015 MRAQEDSNNRILLSLDIPAPSAVTGVSGSITHADNSALQLQQEQPTSSFSSWFPEDDPIY 1074
Query: 60 SADEPVP 66
+ P P
Sbjct: 1075 ALPPPPP 1081
>Z83318-4|CAB05900.1| 145|Caenorhabditis elegans Hypothetical
protein F55B11.4 protein.
Length = 145
Score = 27.9 bits (59), Expect = 0.94
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 15 ADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEED--YPLASADEPVPSASQTS 72
A L K + F ++P +E+G QQ P QI A D Y + P SA+Q S
Sbjct: 72 AHCLLCKGLDFCNSPQTEIGQGTIMRQQPPPPQIGGGAVPDNGYHIGHGVRP-RSATQAS 130
Query: 73 M 73
+
Sbjct: 131 V 131
>Z81077-15|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 32 EVGSHAASAQQQPGDQITVSAEEDYPLASADE---PVPSASQTS 72
++G H + PGD I A+ D P+ S D+ PV S + TS
Sbjct: 323 QLGEHVEWWRGAPGDGIPEHAKTDAPVKSEDDKANPVISITATS 366
>Z75952-6|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 32 EVGSHAASAQQQPGDQITVSAEEDYPLASADE---PVPSASQTS 72
++G H + PGD I A+ D P+ S D+ PV S + TS
Sbjct: 323 QLGEHVEWWRGAPGDGIPEHAKTDAPVKSEDDKANPVISITATS 366
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 37 AASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSM 73
A++A+QQP QI + P + P PS S S+
Sbjct: 8 ASAAEQQPTQQIDQLTVPNAPDGGSSAPAPSTSPNSI 44
>AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical
protein H24G06.1e protein.
Length = 543
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 4 HQESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADE 63
HQ S N ++ ++ L KN+ S S+ +S+ + D + E + AD
Sbjct: 160 HQSSENLRKSTENLALLKNLEEASNHSTPKARTRSSSNLRNADNL--GNMESFGTFDADS 217
Query: 64 PVPSASQTSMVERR 77
+ S S +S+ R
Sbjct: 218 RMKSGSTSSLAHSR 231
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 4 HQESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADE 63
HQ S N ++ ++ L KN+ S S+ +S+ + D + E + AD
Sbjct: 286 HQSSENLRKSTENLALLKNLEEASNHSTPKARTRSSSNLRNADNL--GNMESFGTFDADS 343
Query: 64 PVPSASQTSMVERR 77
+ S S +S+ R
Sbjct: 344 RMKSGSTSSLAHSR 357
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 4 HQESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADE 63
HQ S N ++ ++ L KN+ S S+ +S+ + D + E + AD
Sbjct: 1218 HQSSENLRKSTENLALLKNLEEASNHSTPKARTRSSSNLRNADNL--GNMESFGTFDADS 1275
Query: 64 PVPSASQTSMVERR 77
+ S S +S+ R
Sbjct: 1276 RMKSGSTSSLAHSR 1289
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 4 HQESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADE 63
HQ S N ++ ++ L KN+ S S+ +S+ + D + E + AD
Sbjct: 1297 HQSSENLRKSTENLALLKNLEEASNHSTPKARTRSSSNLRNADNL--GNMESFGTFDADS 1354
Query: 64 PVPSASQTSMVERR 77
+ S S +S+ R
Sbjct: 1355 RMKSGSTSSLAHSR 1368
>Z22176-3|CAA80132.1| 305|Caenorhabditis elegans Hypothetical
protein ZK1098.4 protein.
Length = 305
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 49 TVSAEEDYPLASADEPVPSASQTSMVERRN 78
T+ ++PL AD P +TS++ER N
Sbjct: 236 TIKFVREFPLNQADIPQEFKYRTSVIERNN 265
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 27 STPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTS 72
+TPSS V Q+P S S+ P+PS +QTS
Sbjct: 328 ATPSSSVIPTTTQTTQRPTSTGIPSTVSTSQGTSSTSPIPSTTQTS 373
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 39 SAQQQPGDQITVSAEEDYPLASADEPVP--SASQTSMVERRNQQSTD 83
SA Q G+ ++ + PLA P+P SA +V Q TD
Sbjct: 11636 SAIDQDGELVSTDSTSGVPLAKDGSPLPTNSAGNYVLVSSGKSQPTD 11682
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 39 SAQQQPGDQITVSAEEDYPLASADEPVP--SASQTSMVERRNQQSTD 83
SA Q G+ ++ + PLA P+P SA +V Q TD
Sbjct: 11681 SAIDQDGELVSTDSTSGVPLAKDGSPLPTNSAGNYVLVSSGKSQPTD 11727
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 39 SAQQQPGDQITVSAEEDYPLASADEPVP--SASQTSMVERRNQQSTD 83
SA Q G+ ++ + PLA P+P SA +V Q TD
Sbjct: 11681 SAIDQDGELVSTDSTSGVPLAKDGSPLPTNSAGNYVLVSSGKSQPTD 11727
>AF016445-11|AAC69054.1| 248|Caenorhabditis elegans Hypothetical
protein T05B4.3 protein.
Length = 248
Score = 25.4 bits (53), Expect = 5.0
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 18 TLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTS 72
T + AFV TPS+ S++ S A YP A D P A T+
Sbjct: 24 TTYNGTAFVYTPSATACSNSISDSSCAALYPPADAAIGYPAAGNDAERPFACYTT 78
>U39674-1|AAA80413.2| 137|Caenorhabditis elegans Hypothetical
protein C06E2.5 protein.
Length = 137
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 42 QQPGDQITVSAEEDYPLASADEPVPSASQTSMVERR 77
QQP + + + E A D P P+ T+ V RR
Sbjct: 79 QQPSNAVGATEEPAAKRARTDTPEPNKENTTEVPRR 114
>AL132860-27|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 59 ASADEPVPSASQTSMVE--RRNQQS 81
A+A+EP PS S+ VE R QQS
Sbjct: 194 AAAEEPAPSTSKADAVEEKRSEQQS 218
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 54 EDYPLASADEPVPSASQTSMVERRNQQSTD 83
ED+ S EP SA+ T +E ++ +S+D
Sbjct: 86 EDHTAESTMEPGVSATVTEQLEEKSDKSSD 115
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 54 EDYPLASADEPVPSASQTSMVERRNQQSTD 83
ED+ S EP SA+ T +E ++ +S+D
Sbjct: 86 EDHTAESTMEPGVSATVTEQLEEKSDKSSD 115
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.302 0.114 0.299
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,750
Number of Sequences: 27539
Number of extensions: 60698
Number of successful extensions: 161
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 22
length of query: 83
length of database: 12,573,161
effective HSP length: 62
effective length of query: 21
effective length of database: 10,865,743
effective search space: 228180603
effective search space used: 228180603
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -