GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001114-TA|BGIBMGA001114-PA|undefined
         (83 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   6.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   6.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   6.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 34  GSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVERRNQQST 82
           G   + +    GD   VS  E+    S     P+   T++      QST
Sbjct: 698 GIKRSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQST 746


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 46   DQITVSAEEDYPLASADEPVPSASQTSMVERRNQQSTD 83
            D+ T + +ED  L      VP+   T  V     QS+D
Sbjct: 1284 DKFTATYKEDVKLPCLAVGVPAPEVTWKVRGAVLQSSD 1321


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 35  SHAASAQQQPG 45
           S AAS Q QPG
Sbjct: 210 SQAASQQSQPG 220


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 45  GDQITVSAEEDYPLASADEPVPSAS 69
           GD ++   + DY   S ++ +P +S
Sbjct: 193 GDDLSSEWDSDYTDKSNEKKIPKSS 217


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 65  VPSASQTSMVERRNQQSTD 83
           VPS  Q  ++  RNQ+  D
Sbjct: 598 VPSLDQVWILNWRNQKDID 616


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.302    0.114    0.299 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,868
Number of Sequences: 429
Number of extensions: 661
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 83
length of database: 140,377
effective HSP length: 47
effective length of query: 36
effective length of database: 120,214
effective search space:  4327704
effective search space used:  4327704
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.2 bits)
S2: 37 (19.0 bits)