Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001114-TA|BGIBMGA001114-PA|undefined
(83 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 30 0.22
At4g29950.2 68417.m04261 microtubule-associated protein identica... 29 0.51
At4g29950.1 68417.m04260 microtubule-associated protein identica... 29 0.51
At4g37440.1 68417.m05299 expressed protein 27 1.2
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ... 27 2.1
At3g16620.1 68416.m02124 chloroplast outer membrane protein, put... 26 2.7
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 26 2.7
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 26 3.6
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 26 3.6
At5g40450.1 68418.m04905 expressed protein 25 4.7
At5g24290.2 68418.m02858 integral membrane family protein contai... 25 4.7
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 25 4.7
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 25 6.3
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 25 6.3
At2g20310.1 68415.m02372 expressed protein 25 6.3
At1g30470.1 68414.m03724 SIT4 phosphatase-associated family prot... 25 6.3
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 25 8.3
At5g43320.1 68418.m05294 casein kinase, putative similar to case... 25 8.3
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 25 8.3
At4g21210.1 68417.m03066 expressed protein contains Pfam domain ... 25 8.3
At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY... 25 8.3
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 25 8.3
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 25 8.3
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 25 8.3
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 29.9 bits (64), Expect = 0.22
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 29 PSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVERRNQ 79
P S++ S ASA P D+ + E+ YPL EP+ A T M+ +Q
Sbjct: 571 PISKLTSSLASAS--PADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQ 619
>At4g29950.2 68417.m04261 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 703
Score = 28.7 bits (61), Expect = 0.51
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 9 NRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSA 68
N +S + LF + +S V S S QP + VS +D + D P+P +
Sbjct: 489 NDSDSSNESNLFPDETVKDRETSVVDS-PLSISSQPSMEFIVSLSKDQETSVVDSPLPVS 547
Query: 69 SQTSMVERRNQQSTD 83
SQ S +E QS D
Sbjct: 548 SQPS-IEFPVTQSND 561
>At4g29950.1 68417.m04260 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 828
Score = 28.7 bits (61), Expect = 0.51
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 9 NRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSA 68
N +S + LF + +S V S S QP + VS +D + D P+P +
Sbjct: 614 NDSDSSNESNLFPDETVKDRETSVVDS-PLSISSQPSMEFIVSLSKDQETSVVDSPLPVS 672
Query: 69 SQTSMVERRNQQSTD 83
SQ S +E QS D
Sbjct: 673 SQPS-IEFPVTQSND 686
>At4g37440.1 68417.m05299 expressed protein
Length = 471
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 12 VTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQT 71
V S + ++F +A P + +S QQ+P + + E++ + S ++PV SAS +
Sbjct: 304 VLSENPSIFP-LANTVNPLGAADVYTSSEQQKP--LLAIKNEDEKSIISEEKPVKSASVS 360
Query: 72 S-MVERRNQQSTD 83
S V + ++TD
Sbjct: 361 SHHVSPEDDETTD 373
>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
MAP3K epsilon protein kinase [Arabidopsis thaliana]
gi|3549652|emb|CAA12272
Length = 1368
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 26 VSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSM 73
V TPSS G+ A PGD + +PL E P+ + TSM
Sbjct: 448 VKTPSSVSGNELARFSDPPGD--ASLHDLFHPLDKVSEGKPNEASTSM 493
>At3g16620.1 68416.m02124 chloroplast outer membrane protein,
putative similar to chloroplast protein import
component Toc159 [Pisum sativum] GI:8489806,
chloroplast outer envelope protein 86 [Pisum sativum]
GI:599958, GTP-binding protein [Pisum sativum]
GI:576509
Length = 1089
Score = 26.2 bits (55), Expect = 2.7
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 26 VSTPSSEVGSHAASAQQ--QPGDQITVSAEEDYPLASADEPVPSASQTSMVER 76
V EV A +Q+ +P T +ED+PLAS DE V +TS ER
Sbjct: 33 VKDNEEEVFEEAIGSQEGLKPESLKTDVLQEDFPLASNDE-VCDLEETSRNER 84
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 22 NIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVER 76
N++ + TPS+E+G+ D + + A D +A A E +AS+ ++E+
Sbjct: 367 NMSHMETPSTEMGNITNLVDSGEVDHVDLLAAMDEKIARAKE--EAASRKGIIEK 419
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 35 SHAASAQQQPGDQIT-VSAEEDYPLASADEPVPSASQTSMV 74
S A + QQP + + +SA ++ AS D P+P+A T+++
Sbjct: 371 SFAGNLGQQPTSRPSELSAPKNEGWASFDNPMPAAKSTNVI 411
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 35 SHAASAQQQPGDQIT-VSAEEDYPLASADEPVPSASQTSMV 74
S A + QQP + + +SA ++ AS D P+P+A T+++
Sbjct: 371 SFAGNLGQQPTSRPSELSAPKNEGWASFDNPMPAAKSTNVI 411
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 32 EVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVERRNQQS 81
++ S A+ ++ D+IT EE + D PVP S+T + E + ++
Sbjct: 359 DIESKASLDHEEEMDKITKDTEEQEHVLVRDVPVPQ-SETLVTEAKTAET 407
>At5g24290.2 68418.m02858 integral membrane family protein
contains Pfam domain PF01988: Integral membrane protein
Length = 534
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 27 STPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVERRNQQST 82
+ P+ E S AA+ P + + EED + A +P+ S S + T
Sbjct: 41 NVPAREFRSKAAATAPAPVNTTEIELEEDNDGSQAQDPIVLESTVSETGSNEESET 96
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 32 EVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVERRNQ 79
++ + A A+ Q D +T + + +P+A+ + P +Q + ++ +NQ
Sbjct: 204 KLSTGAKLARDQQPDLLTRNQQCQFPVATQNTQFPMENQQAWLQMKNQ 251
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 25.0 bits (52), Expect = 6.3
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 5 QESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEP 64
+ES + SADV+L + + PS+ V ++PG T SA+ + +P
Sbjct: 2799 EESKEPGIESADVSLHQLADIQAEPSNLVDQMDIEESKEPG---TESADVSLHQLADIQP 2855
Query: 65 VPSASQTSM-VERRNQQSTD 83
PS M E+ + T+
Sbjct: 2856 GPSILVDQMDTEKSKEPGTE 2875
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 25.0 bits (52), Expect = 6.3
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 5 QESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEP 64
+ES + SADV+L + + PS+ V ++PG T SA+ + +P
Sbjct: 2799 EESKEPGIESADVSLHQLADIQAEPSNLVDQMDIEESKEPG---TESADVSLHQLADIQP 2855
Query: 65 VPSASQTSM-VERRNQQSTD 83
PS M E+ + T+
Sbjct: 2856 GPSILVDQMDTEKSKEPGTE 2875
>At2g20310.1 68415.m02372 expressed protein
Length = 430
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 29 PSSEVGSHAASAQQQPG--DQITVSAEEDYPLASADEPVPSASQTSMVERRNQ 79
P + SH A+ QQQPG + + + ++ + P P+ + + E NQ
Sbjct: 362 PLTAEDSHTATVQQQPGINENVLETKLSEFEKWLMENPNPTGPVSPLPEPGNQ 414
>At1g30470.1 68414.m03724 SIT4 phosphatase-associated family protein
contains similarity to copper chaperone homolog CCH
GB:AAF15286 GI:6525011 from [Glycine max]; contains Pfam
profile PF04499: SIT4 phosphatase-associated protein
Length = 811
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 36 HAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVERRNQQST 82
+A +A P D T + +P + EP P S + R +ST
Sbjct: 630 NATAASSPPVDMETEDSTSKHPSENPSEPEPEKSPAWVEWRETSEST 676
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 23 IAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPL--ASADEPVPSASQ 70
+ F+S S+ A + Q+ G I+V+ +D+P S DE + A +
Sbjct: 77 VNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEK 126
>At5g43320.1 68418.m05294 casein kinase, putative similar to casein
kinase I (CKI2) [Arabidopsis thaliana]
gi|1103322|emb|CAA55397; contains protein kinase domain,
Pfam:PF00069
Length = 480
Score = 24.6 bits (51), Expect = 8.3
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 2 SHHQESNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASA 61
S + S N +S D T +N V P S HA+S+++ + ++ D+ +
Sbjct: 364 SRPRTSENVLASSKDTTP-QNYERVERPISST-RHASSSRKAVVSSVRATSSADFTENRS 421
Query: 62 DEPVPSASQTSMVER 76
VPS ++S +R
Sbjct: 422 SRVVPSNGRSSTAQR 436
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 40 AQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVER 76
A Q G++ITV +EE+ P VP +SM R
Sbjct: 1226 AGAQAGEEITVLSEEEEPEDVFSGVVPVGRGSSMTTR 1262
>At4g21210.1 68417.m03066 expressed protein contains Pfam domain
PF03618: Domain of unknown function (DUF299)
Length = 403
Score = 24.6 bits (51), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 7 SNNRDVTSADVTLFKNIAFVSTPSSEVGSHAASA 40
S++ V+ AD+T K+I VS + HA +A
Sbjct: 102 SSSNGVSEADMTAAKSIYIVSDGTGWTAEHAVNA 135
>At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY1)
similar to Ara4-interacting protein [Arabidopsis
thaliana] GI:13160609; contains Pfam profiles PF00789:
UBX domain, PF02809: Ubiquitin interaction motif
Length = 564
Score = 24.6 bits (51), Expect = 8.3
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 30 SSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVERRNQQS 81
+SE+G+ A +A Q P D ++ P + D+ + +V R +++
Sbjct: 260 TSEIGASAVTAAQGPQDTQALNGRLAAPSSPFDDDSDDVDEQPLVRHRPRRA 311
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 48 ITVSAEEDYPLASADEPVPSASQTSMV 74
+TVS D PL SA PV AS S+V
Sbjct: 287 VTVSKYMDSPLLSAALPVFDASNKSIV 313
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 26 VSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVER 76
+ PS + + I VS+EED + AD + A + VER
Sbjct: 184 IEAPSQTLSLEDGDTLVVDKNPIEVSSEEDVHVIDADNLIKEAHPENFVER 234
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 26 VSTPSSEVGSHAASAQQQPGDQITVSAEEDYPLASADEPVPSASQTSMVER 76
+ PS + + I VS+EED + AD + A + VER
Sbjct: 184 IEAPSQTLSLEDGDTLVVDKNPIEVSSEEDVHVIDADNLIKEAHPENFVER 234
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.302 0.114 0.299
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,880
Number of Sequences: 28952
Number of extensions: 53814
Number of successful extensions: 128
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 24
length of query: 83
length of database: 12,070,560
effective HSP length: 62
effective length of query: 21
effective length of database: 10,275,536
effective search space: 215786256
effective search space used: 215786256
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
S2: 51 (24.6 bits)
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