Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
         (87 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.095
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   1.6  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    24   2.7  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    23   4.7  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    23   4.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    23   8.3  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    23   8.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    23   8.3  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    23   8.3  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 29.1 bits (62), Expect = 0.095
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 1   MSIYTLLDIGLTQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSL 60
           +S+++L +  L    PE  +     Q IP++      Y+  SSDG  LP S+   ++ S 
Sbjct: 219 LSMHSLQE-SLHSVEPESPIFQQAPQ-IPLSNASQQSYINHSSDGASLPQSSFLNFNSSG 276

Query: 61  PKMTIANQQKDKQSLY 76
            +++++   +  ++L+
Sbjct: 277 KRVSVSAAAQQHKNLF 292


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 45  GLRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQN 79
           G  LP+STV   DY+ P++     Q D+Q L  +N
Sbjct: 639 GGSLPSSTV-PSDYNQPQLVSPRAQADQQGLSYKN 672


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 8   DIGLTQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIAN 67
           D  L++ + E  V     Q    NLT L      S + L      +   +  L ++++ N
Sbjct: 157 DQALSEKNHEVMVSNQALQMKDTNLTNLEKLFADSREQLETKCKELAAAEQQLQELSVHN 216

Query: 68  QQKDKQSLYKQNDAIKISR 86
           QQ + +S+ + + +I++ +
Sbjct: 217 QQLE-ESIKQVSSSIELEK 234


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 7   LDIGLTQASPEGAVVGLLKQRIPVNLTRLSVY 38
           LDI     SP G  +  L+Q   +N++R  +Y
Sbjct: 458 LDISNNLRSPRGKPITALRQLEVLNMSRNDIY 489


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 18 GAVVGLLKQRIPVNLTRLSVYLGRSS 43
          G +VG +++R P  +  L  YLG S+
Sbjct: 62 GFIVGKIRERKPKIMVELGGYLGYSA 87


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 52  TVYVYDYSLPKMTIANQQKDKQSL--YKQN 79
           T  ++DY+  K T+ N Q+D +S   +K+N
Sbjct: 359 TYSLFDYAGLKQTVYNYQEDPKSTLSFKKN 388


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 49  PTSTVYVYDYSLPKMTIANQQKDKQSLYKQNDAIK 83
           P + +Y+Y Y L K T+      +  ++ +  ++K
Sbjct: 335 PDAYIYIYSYFLCKDTVLIMGSSESGVFFEMQSVK 369


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 29   PVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPK 62
            P+ L+     +  S DG RL  + ++ +   LP+
Sbjct: 986  PLQLSSDPALIQLSLDGFRLAMNVIFFFSMDLPR 1019


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 46  LRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQ 78
           L+ P S +Y  D +LP + +    +  QS Y Q
Sbjct: 188 LQAPYSGIYFPDLNLPHVLLGTFARYGQSKYAQ 220


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,115
Number of Sequences: 5004
Number of extensions: 12330
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 87
length of database: 2,362,478
effective HSP length: 61
effective length of query: 26
effective length of database: 2,057,234
effective search space: 53488084
effective search space used: 53488084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)