Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
(87 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05) 29 0.70
SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.6
SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9) 26 3.8
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 26 5.0
SB_48993| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.0
SB_37225| Best HMM Match : LRR_1 (HMM E-Value=2.6e-11) 26 5.0
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.0
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 26 5.0
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 26 5.0
SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4) 26 5.0
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 26 5.0
SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.0
SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8) 26 5.0
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.6
SB_14579| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.6
SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 25 6.6
SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.6
SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6) 25 6.6
SB_3026| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.7
>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
Length = 601
Score = 28.7 bits (61), Expect = 0.70
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 1 MSIYTLLDIGLTQASPEGAVVGLLKQRIPVNLTRLSVYLG 40
+S + + D G+ A+P G V ++K R PVN+T+L +LG
Sbjct: 262 VSRHVISDKGIA-ANP-GKVESIVKARAPVNVTKLRGFLG 299
>SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 4 YTLLDIGLTQASPEGAVVGLLKQRIPVNLTRLSVYLG 40
+ +LD G+ A+ G V ++ R PVN+T L +LG
Sbjct: 595 HVILDKGI--AADPGKVESIVNTRAPVNVTELRGFLG 629
>SB_23070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 14 ASPEGAVVGLLKQRIPVNLTRLSVYLG 40
A+ G V ++K R PVN+T L +LG
Sbjct: 880 AADPGKVESIVKARAPVNVTELRRFLG 906
>SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)
Length = 554
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 17 EGAVVGLLKQRIPVNLTRLSVYLG 40
E V LL+ R PVN++ L YLG
Sbjct: 150 EDKVQALLETRAPVNVSELKSYLG 173
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 213 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLG 251
>SB_48993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 98 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLG 136
>SB_37225| Best HMM Match : LRR_1 (HMM E-Value=2.6e-11)
Length = 497
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 1 MSIYTLLDIGLTQA-SPEGAVVGLLKQRIPV---NLTRLSVYLGRSSDGL 46
+ ++ LD +++ SPE + GL + RIP+ L RL L + DG+
Sbjct: 437 VDLFNCLDKDKSRSVSPEELIEGLKRARIPLTDSQLKRLITLLDKDGDGM 486
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 1156 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLG 1194
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 20 VVGLLKQRIPVNLTRLSVYLG 40
V LL+ R PVN+++L YLG
Sbjct: 461 VQALLETRAPVNVSKLKSYLG 481
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 447 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLG 485
>SB_39271| Best HMM Match : Secretin_N (HMM E-Value=2.4)
Length = 300
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 98 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLG 136
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 656 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLG 694
>SB_12900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 447 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLG 485
>SB_9508| Best HMM Match : Secretin_N (HMM E-Value=1.8)
Length = 391
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 80 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELKAYLG 118
>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 12 TQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYS 59
TQ++PEG + GL + + + +DG+ +P+S V++ + S
Sbjct: 671 TQSAPEGRIFGL-------KAVNMKIPIPDEADGIIVPSSPVFISETS 711
>SB_14579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 33 TRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQN 79
TRL VY+ + G + Y Y K + + KD Y QN
Sbjct: 1 TRLPVYISHTPAGTSVKNMIHYAQMYKSKKFEMYDYGKDNIKRYGQN 47
>SB_31551| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 429
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 186 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELRAYLG 224
>SB_27585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 6 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELRAYLG 44
>SB_14634| Best HMM Match : ATP-synt_E (HMM E-Value=2.6)
Length = 309
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IYTLLDIGLTQASP-EGAVVGLLKQRIPVNLTRLSVYLG 40
+Y I T SP + V L+K + P N+T L YLG
Sbjct: 6 VYLGHQIDKTGISPVKDKVEALVKAKTPENVTELRAYLG 44
>SB_3026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 915
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 20 VVGLLKQRIPVNLTRLSVYLG 40
V L+K + P N+T+L YLG
Sbjct: 518 VEALVKAKTPENVTKLKAYLG 538
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,873
Number of Sequences: 59808
Number of extensions: 83058
Number of successful extensions: 127
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 20
length of query: 87
length of database: 16,821,457
effective HSP length: 64
effective length of query: 23
effective length of database: 12,993,745
effective search space: 298856135
effective search space used: 298856135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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