Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
         (87 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM177179-1|CAJ45483.1| 1621|Homo sapiens kinesin-like protein KI...    28   5.3  
BC022089-1|AAH22089.1|  971|Homo sapiens DIS3 mitotic control ho...    27   9.3  
AK095407-1|BAC04542.1|  750|Homo sapiens protein ( Homo sapiens ...    27   9.3  
AB075835-1|BAB85541.1|  947|Homo sapiens KIAA1955 protein protein.     27   9.3  

>AM177179-1|CAJ45483.1| 1621|Homo sapiens kinesin-like protein
           KIF21A variant protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 7   LDIGLTQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIA 66
           + +   QASP  A  G  K+     LT   V++ +++  ++       V D  + KMTI+
Sbjct: 848 IPVARVQASPTPATNGNRKKYQRKGLTG-RVFISKTAR-MKWQLLERRVTDIIMQKMTIS 905

Query: 67  NQQKDKQSLYKQNDAIKISRK 87
           N + D   L KQ + +   R+
Sbjct: 906 NMEADMNRLLKQREELTKRRE 926


>BC022089-1|AAH22089.1|  971|Homo sapiens DIS3 mitotic control
           homolog (S. cerevisiae)-like protein.
          Length = 971

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  TQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIANQQKD 71
           ++  P G VVG+L++     +          S G       V  +DY +PK+ I+ QQ +
Sbjct: 243 SEPMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRISTQQAE 302


>AK095407-1|BAC04542.1|  750|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38088 fis, clone CTONG2020031, weakly similar to
           Mitotic control protein dis3. ).
          Length = 750

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  TQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIANQQKD 71
           ++  P G VVG+L++     +          S G       V  +DY +PK+ I+ QQ +
Sbjct: 326 SEPMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRISTQQAE 385


>AB075835-1|BAB85541.1|  947|Homo sapiens KIAA1955 protein protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 12  TQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIANQQKD 71
           ++  P G VVG+L++     +          S G       V  +DY +PK+ I+ QQ +
Sbjct: 219 SEPMPTGRVVGILQKNWRDYVVTFPSKEEVQSQGKNAQKILVTPWDYRIPKIRISTQQAE 278


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,016,020
Number of Sequences: 224733
Number of extensions: 348965
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 4
length of query: 87
length of database: 73,234,838
effective HSP length: 65
effective length of query: 22
effective length of database: 58,627,193
effective search space: 1289798246
effective search space used: 1289798246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)