GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
         (87 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6D7B4 Cluster: Putative uncharacterized protein; n=1; ...    36   0.16 
UniRef50_Q5SKX5 Cluster: TerC family protein; n=4; Thermus therm...    31   4.5  
UniRef50_A6EG85 Cluster: Outer membrane protein, putative; n=1; ...    31   4.5  
UniRef50_Q5KQ98 Cluster: Cation transporter, putative; n=2; Filo...    31   4.5  
UniRef50_P95552 Cluster: Heme protein NirN; n=17; Proteobacteria...    31   6.0  

>UniRef50_A6D7B4 Cluster: Putative uncharacterized protein; n=1;
           Vibrio shilonii AK1|Rep: Putative uncharacterized
           protein - Vibrio shilonii AK1
          Length = 373

 Score = 35.9 bits (79), Expect = 0.16
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 18  GAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDY 58
           GA+VG   +++P+ L+R S +L R  D L L T+T Y  DY
Sbjct: 223 GALVGRKLKQVPLTLSRWSNWLARYPDSLVLSTNTGYQRDY 263


>UniRef50_Q5SKX5 Cluster: TerC family protein; n=4; Thermus
          thermophilus|Rep: TerC family protein - Thermus
          thermophilus (strain HB8 / ATCC 27634 / DSM 579)
          Length = 230

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 12/39 (30%), Positives = 27/39 (69%)

Query: 2  SIYTLLDIGLTQASPEGAVVGLLKQRIPVNLTRLSVYLG 40
          +I+TL+ + +  ++    ++G+L QR+PV+L R +++ G
Sbjct: 9  AIFTLIVLEVILSADNALILGVLVQRLPVHLRRKALFYG 47


>UniRef50_A6EG85 Cluster: Outer membrane protein, putative; n=1;
           Pedobacter sp. BAL39|Rep: Outer membrane protein,
           putative - Pedobacter sp. BAL39
          Length = 432

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 4   YTLLDIGLTQASPEGAVVGL--LKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLP 61
           YTL D G+ +A+ E A  GL   K  +  N  +++  +      +    + + + D  L 
Sbjct: 107 YTLWDFGVVKANVERAKAGLQYAKDNVEYNQNQMAFQVANIYYQMTYLKAAISIQDSVL- 165

Query: 62  KMTIANQQKDKQSLYKQNDAIK 83
              + + +KD +  YK  DA+K
Sbjct: 166 -QFLRSNKKDTEIKYKNGDALK 186


>UniRef50_Q5KQ98 Cluster: Cation transporter, putative; n=2;
           Filobasidiella neoformans|Rep: Cation transporter,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 989

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 10  GLTQA-SPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSL 60
           GLT+  S +G V+G L++R       +  Y+G   D + L  +++Y Y+Y L
Sbjct: 812 GLTRLLSAKGTVIGRLRKRAKEEGGTVEAYIGDVEDHILLLQNSLYHYEYIL 863


>UniRef50_P95552 Cluster: Heme protein NirN; n=17;
          Proteobacteria|Rep: Heme protein NirN - Pseudomonas
          stutzeri (Pseudomonas perfectomarina)
          Length = 507

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 48 LPTSTVYVYDYSLPKMTIANQQKDKQSLYKQN 79
          LP +T    D ++P+   A Q  D Q+LY+Q+
Sbjct: 13 LPAATFVALDLAIPRAAAATQPTDSQALYEQH 44


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,427,865
Number of Sequences: 1657284
Number of extensions: 2990118
Number of successful extensions: 7284
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7281
Number of HSP's gapped (non-prelim): 5
length of query: 87
length of database: 575,637,011
effective HSP length: 65
effective length of query: 22
effective length of database: 467,913,551
effective search space: 10294098122
effective search space used: 10294098122
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)