GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
         (87 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   5.8  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    19   7.6  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    19   7.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    19   7.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.4 bits (38), Expect = 5.8
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 7   LDIGLTQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSL 60
           +D  +TQ   EG +  L +  +   LTR  ++L    +G+++    +   D+S+
Sbjct: 353 IDAIMTQLREEGWIHHLARHAVACFLTRGDLWLS-WEEGMKVFEELLLDADWSV 405


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 19.0 bits (37), Expect = 7.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 49  PTSTVYVYDYSLPKMTIANQQKDKQ 73
           P S  Y Y + LP+   +  Q+ K+
Sbjct: 273 PLSMYYQYPFGLPEYEYSFYQEVKK 297


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 19.0 bits (37), Expect = 7.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 52  TVYVYDYSLPKMTIANQQKDKQSLYKQN 79
           T+    YSL K+   ++ +D  S  K N
Sbjct: 288 TILGISYSLEKLKTGDEIQDLISTIKDN 315


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 19.0 bits (37), Expect = 7.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 52  TVYVYDYSLPKMTIANQQKDKQSLYKQN 79
           T+    YSL K+   ++ +D  S  K N
Sbjct: 288 TILGISYSLEKLKTGDEIQDLISTIKDN 315


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,492
Number of Sequences: 317
Number of extensions: 564
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 87
length of database: 114,650
effective HSP length: 47
effective length of query: 40
effective length of database: 99,751
effective search space:  3990040
effective search space used:  3990040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)