GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
         (87 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297...    27   1.9  
11_01_0392 + 2955442-2956876,2957694-2957851                           25   5.7  
06_01_1060 + 8522131-8523606                                           25   7.5  
01_05_0194 - 19107143-19108055,19110864-19111132                       25   7.5  
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609...    25   7.5  
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    25   7.5  
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296...    25   9.9  
01_01_0391 + 3015864-3016179,3016933-3017756,3017841-3018107,301...    25   9.9  

>08_01_0332 +
           2971361-2971439,2971596-2971783,2971985-2972062,
           2972354-2972425,2972513-2972631,2972858-2972942,
           2973096-2973185,2973268-2973369,2973448-2973624,
           2973874-2973954,2974511-2974582,2974662-2974756,
           2974831-2974919,2975016-2975078,2975161-2975204,
           2975554-2975685
          Length = 521

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/59 (20%), Positives = 31/59 (52%)

Query: 21  VGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQN 79
           +G  K+ + +    + + +  ++ G  L T+ ++  D+ +P++   +  K  + LY+QN
Sbjct: 207 LGKAKKIVVIGGGYIGMEVAAAACGWNLDTTIIFPEDHIMPRLFTPSLAKKYEELYQQN 265


>11_01_0392 + 2955442-2956876,2957694-2957851
          Length = 530

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 23  LLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMT 64
           L ++ IPV+L+R++V  G+  D +          +  LPK+T
Sbjct: 393 LFERNIPVDLSRIAVVDGQVQDFMVYDVRVAGPAEGELPKLT 434


>06_01_1060 + 8522131-8523606
          Length = 491

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 11 LTQASPEGAVVGLLKQRIPVNLTRLSVYL--GRSSDGLRLPTSTVYVYDYS 59
          LT  +PE  V+G L++   V+L  L+++L    ++  L L    VY+ DY+
Sbjct: 41 LTHLAPEEVVIGRLRELRTVHLF-LAIFLPVAAATMYLMLRPRPVYLVDYA 90


>01_05_0194 - 19107143-19108055,19110864-19111132
          Length = 393

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 8   DIGLTQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPT 50
           D  L + S +  + GLL  R PV +   S+ L   S+  RL T
Sbjct: 134 DQNLIRGSGKNIMKGLLSSRKPVGMDVTSIKLKGDSNNKRLVT 176


>01_03_0050 +
           11959421-11959736,11959892-11959960,11960641-11960979,
           11961090-11961152,11962472-11962962,11963773-11964441
          Length = 648

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 16  PEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPT-STVYVYDYSLPKMTIANQQKDKQS 74
           P  AV+  L +R P   T +++Y      G R  +       D  LP   + +  KD   
Sbjct: 371 PAHAVISTLSKRAPDCQTEVTMYSSEEKSGERCQSHKKAITVDLLLPNGHMGDLCKDNDD 430

Query: 75  LYKQNDA 81
           +   N A
Sbjct: 431 VLIDNQA 437


>01_01_0078 +
          587975-588179,588506-588606,589087-589167,
          589240-590178,590388-590542,590837-590902,
          590963-591023,591659-591853,591939-592049,592116-592280
          Length = 692

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 40 GRSSDGLRLPTSTVYVYDYSL 60
          GR  DG+++P ST  VY+Y L
Sbjct: 76 GRKKDGVQIPAST-KVYEYIL 95


>11_01_0393 +
           2961434-2961564,2961862-2961865,2962429-2963970,
           2964572-2964675,2964791-2964877,2965378-2965414,
           2965729-2965801,2965963-2967494
          Length = 1169

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 23  LLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMT 64
           L ++ IPV+++R++V  G+    L          D  LPK+T
Sbjct: 475 LFERNIPVDMSRIAVVDGQVQGCLLYDVRVAGPADGELPKLT 516


>01_01_0391 +
           3015864-3016179,3016933-3017756,3017841-3018107,
           3018505-3018762,3018950-3018997
          Length = 570

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 22  GLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQN 79
           G++   +P +    SV L  S+  LRLPT+  +    SL  +++ N + +  S++  N
Sbjct: 302 GMILAELPSSPRLKSVMLSLSNARLRLPTAAAF---DSLVDLSLENVRLEDNSIHLLN 356


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,298
Number of Sequences: 37544
Number of extensions: 70354
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 8
length of query: 87
length of database: 14,793,348
effective HSP length: 66
effective length of query: 21
effective length of database: 12,315,444
effective search space: 258624324
effective search space used: 258624324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)