GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
         (87 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p...    27   2.1  
AF039040-5|AAB94181.2|  472|Caenorhabditis elegans Hypothetical ...    26   3.8  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    25   5.0  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    25   6.6  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    25   6.6  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    25   6.6  
AF022978-4|AAG24178.1|  383|Caenorhabditis elegans Hypothetical ...    25   8.7  

>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
           protein T08A9.1 protein.
          Length = 1330

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 25  KQRIPVNL-TRLSVYLGRSSDGLRLPTSTVYVYDYSLP----KMTIANQQKDKQSLYKQN 79
           KQ I  NL TR+S ++ ++ D LR+  + +  Y+Y        M +  Q +D   LY Q+
Sbjct: 355 KQEILKNLRTRMSGFVVQNYDRLRVVLNDIVQYEYKSNAVRIHMDLIGQIRDAPILYSQS 414

Query: 80  DAIKISRK 87
            +  + R+
Sbjct: 415 VSEIVRRR 422


>AF039040-5|AAB94181.2|  472|Caenorhabditis elegans Hypothetical
           protein T22B11.1 protein.
          Length = 472

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 43  SDGLRLPTSTVYVYDYSLPKMT-IANQQKDKQSLYKQNDAI 82
           ++G+RL +S +    +  PK+T   N++ +K  LY++ D +
Sbjct: 375 TNGIRLHSSLITSVIFDKPKITGCYNKKDEKDGLYERYDKV 415


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical
          protein F54F11.2 protein.
          Length = 1589

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 3  IYTLLDIG--LTQASPEGAVVGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSL 60
          ++TLL +   +  A   G V+ +L      N    ++Y G ++    +  ++ YVY+ ++
Sbjct: 10 VHTLLLVAGIVLTAGVLGVVIAILVNENNTNTNTNTIYNGTNTYNSTIQYNSTYVYNSTI 69

Query: 61 PKMTIANQ 68
           ++ IA++
Sbjct: 70 IEIDIASK 77


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 20   VVGLLKQRIPVNLTRLSVYLGRSSDGLRLPT 50
            VVG   Q +P + T  +VY  R  DG  LPT
Sbjct: 3283 VVGPDGQALPTDETGKTVYPVRGPDGTPLPT 3313


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 20   VVGLLKQRIPVNLTRLSVYLGRSSDGLRLPT 50
            VVG   Q +P + T  +VY  R  DG  LPT
Sbjct: 3328 VVGPDGQALPTDETGKTVYPVRGPDGTPLPT 3358


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 20   VVGLLKQRIPVNLTRLSVYLGRSSDGLRLPT 50
            VVG   Q +P + T  +VY  R  DG  LPT
Sbjct: 3328 VVGPDGQALPTDETGKTVYPVRGPDGTPLPT 3358


>AF022978-4|AAG24178.1|  383|Caenorhabditis elegans Hypothetical
           protein T01G6.5 protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 21  VGLLKQRIPVNLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTI 65
           VG L Q + +N + +          L   T  +++ DYS P+M I
Sbjct: 335 VGRLTQMLKINFSLMKNIRTTRERSLIAQTFDIFIADYSHPEMFI 379


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,114
Number of Sequences: 27539
Number of extensions: 62682
Number of successful extensions: 241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 109
length of query: 87
length of database: 12,573,161
effective HSP length: 66
effective length of query: 21
effective length of database: 10,755,587
effective search space: 225867327
effective search space used: 225867327
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)