GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
         (87 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   0.72 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   2.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   5.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   5.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   5.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   5.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   5.1  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 0.72
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 63  MTIANQQKDKQSLYKQN 79
           M I+N   DKQSL K+N
Sbjct: 370 MKISNLSFDKQSLLKEN 386


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 16/55 (29%), Positives = 22/55 (40%)

Query: 31  NLTRLSVYLGRSSDGLRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQNDAIKIS 85
           NL  +   LG     L    +T   YDYSL ++  A     +  L +  D   IS
Sbjct: 333 NLHGMPGILGGIFGALMAALATEASYDYSLYEIFPARAPNSETKLAEMRDNYGIS 387


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 40  GRSSDGLRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQND 80
           G S   L   T+ +Y    +   +   N ++ + S Y+QND
Sbjct: 252 GISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQND 292


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 48  LPTSTVYVYDYSLPKMTIANQQKDKQSLYKQNDA----IKISRK 87
           LPTST       LPK    +  K K  + + +D      KI+RK
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRK 410


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 40  GRSSDGLRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQND 80
           G S   L   T+ +Y    +   +   N ++ + S Y+QND
Sbjct: 252 GISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQND 292


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 40  GRSSDGLRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQND 80
           G S   L   T+ +Y    +   +   N ++ + S Y+QND
Sbjct: 252 GISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQND 292


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 5.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  GRSSDGLRLPTSTV 53
           G  SDG+RLP   V
Sbjct: 381 GLDSDGIRLPCREV 394


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,251
Number of Sequences: 429
Number of extensions: 648
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 87
length of database: 140,377
effective HSP length: 48
effective length of query: 39
effective length of database: 119,785
effective search space:  4671615
effective search space used:  4671615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)