GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001113-TA|BGIBMGA001113-PA|undefined
         (87 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18390.1 68418.m02163 pentatricopeptide (PPR) repeat-containi...    25   4.7  
At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containi...    25   8.2  
At3g58430.1 68416.m06512 meprin and TRAF homology domain-contain...    25   8.2  
At1g30510.2 68414.m03732 ferredoxin--NADP(+) reductase, putative...    25   8.2  
At1g16670.1 68414.m01996 protein kinase family protein contains ...    25   8.2  

>At5g18390.1 68418.m02163 pentatricopeptide (PPR)
          repeat-containing protein contains Pfam profile
          PF01535: PPR repeat
          Length = 459

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 30 VNLTRLSVYLGRSSDGLRLPTSTVYVY 56
          VN+ R  ++  RS + LRLP ++ +V+
Sbjct: 55 VNIVRREIHPERSLNSLRLPVTSEFVF 81


>At5g48390.1 68418.m05983 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 900

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 26  QRIPVNLTRLSVYLGRSSDGLRLPTSTVYVY 56
           Q +PV +  LS +L     G ++PT+ V V+
Sbjct: 534 QALPVAVASLSKFLSFYISGKKMPTTEVVVF 564


>At3g58430.1 68416.m06512 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains weak hit to Pfam PF00917: MATH
           domain
          Length = 552

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 46  LRLPTSTVYVYDYSLPKMTIANQQKDKQSLYKQND 80
           L LP S ++  +    ++TI NQ  +K S+ K+++
Sbjct: 256 LCLPDSQLFPSEVVKARLTIVNQLSEKLSISKESE 290


>At1g30510.2 68414.m03732 ferredoxin--NADP(+) reductase, putative
          / adrenodoxin reductase, putative strong similarity to
          SP|P41345 Ferredoxin--NADP reductase, root isozyme,
          chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
          sativa}, ferredoxin-NADP reductase precursor [Zea mays]
          GI:500751
          Length = 382

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/25 (36%), Positives = 19/25 (76%)

Query: 63 MTIANQQKDKQSLYKQNDAIKISRK 87
          ++I NQ+  ++S++KQN++I  + K
Sbjct: 14 VSIENQRSLRRSVFKQNNSISFNSK 38


>At1g16670.1 68414.m01996 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like serine/threonine kinase GI:2465923 from
           [Arabidopsis thaliana]
          Length = 390

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 15  SPEGAVVGLLKQRIPV---NLTRLSVYLGRSSDGLRLPTSTVYVYD 57
           +PE AV G L ++  +    +  + +  GRS+   RLPT   Y+ +
Sbjct: 213 APEYAVRGQLTRKADIYSFGVLLMEIVSGRSNKNTRLPTEYQYLLE 258


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,833
Number of Sequences: 28952
Number of extensions: 60455
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 5
length of query: 87
length of database: 12,070,560
effective HSP length: 66
effective length of query: 21
effective length of database: 10,159,728
effective search space: 213354288
effective search space used: 213354288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)