Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001112-TA|BGIBMGA001112-PA|undefined
         (251 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    26   0.32 
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           24   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.0  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   9.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 86  PAPQR--TPVRRRGAVSPATSVESMSTSVASLAS 117
           PAPQ   TP+   G  SPA +    +TS  S AS
Sbjct: 13  PAPQSAATPISSSGMTSPAAAPPPATTSSGSPAS 46



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 83  DTMPAPQRTPVRRRGAVSPATSVESMSTSVASLASG 118
           D  P P  TP   RG V+ A ++ + + S    A+G
Sbjct: 162 DHQPVPYLTPADDRGRVAAAAAMVAETASFHHDAAG 197


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 13  SRCSSIAGSMRSTLTSDSGATNPTRP 38
           S  SS   S+ S  T+D  +TNPT P
Sbjct: 123 STVSSSTSSIPSPSTTDDLSTNPTPP 148


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)

Query: 100 SPATSVESMSTSVAS 114
           SP+TSV S S SVAS
Sbjct: 703 SPSTSVASPSVSVAS 717


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)

Query: 100 SPATSVESMSTSVAS 114
           SP+TSV S S SVAS
Sbjct: 595 SPSTSVASPSVSVAS 609


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 187 SPVLREGTPLSPMPALAHSGPPARKM 212
           SP+L E   +SP      S PP  ++
Sbjct: 84  SPILAEKVSVSPTTPPTPSPPPEERL 109


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 192 EGTPLSPMPALAHSGPPARKM 212
           +G P S  P   H  PP+ K+
Sbjct: 22  QGYPASVQPLPRHFNPPSDKL 42


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.123    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,285
Number of Sequences: 317
Number of extensions: 1615
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 251
length of database: 114,650
effective HSP length: 55
effective length of query: 196
effective length of database: 97,215
effective search space: 19054140
effective search space used: 19054140
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)