GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001112-TA|BGIBMGA001112-PA|undefined
         (251 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.12 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.38 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.66 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 32  ATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIEVPEKTMAIEVAGAATT-KDTMPAPQR 90
           +T  T P   +K      P+ +S      S    + +  +  E +   T    T+  P  
Sbjct: 785 STKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTINTPTT 844

Query: 91  TPVRRRGAVSPATSVESMSTSVASL 115
           + +   G   P TS+ + STS+ S+
Sbjct: 845 SVISMSGTTVPITSLPASSTSINSI 869


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 56  DGGASSSSIEVPEKTMAIEVAGAAT-TKDTMPAPQR-TPVRRRGAVSPATSVESMSTSVA 113
           +GG SS+ + V   T+A  VAGAA+ T      P+         A +P      + ++VA
Sbjct: 5   NGGGSSAGVGVVGGTIASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVA 64

Query: 114 SLASG 118
             A G
Sbjct: 65  GTAGG 69



 Score = 23.0 bits (47), Expect = 2.7
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 42  KKRGRRKTPLPTSDDGGASSSSIEVPEKTMAIEVAGAATTKDTMPAPQRTPVRRRGAVSP 101
           K +  +  P  T+ +G   S  I   +  + IE A A +   +  +   TPV   G V P
Sbjct: 271 KAQKEKDKPNSTTMNGSPGSGGIRSDQMGVKIEPAEAESLSTSGSSGILTPVSPYGYVKP 330


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 20/90 (22%), Positives = 32/90 (35%)

Query: 23  RSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIEVPEKTMAIEVAGAATTK 82
           R  +T+D    N    +    +GR    +P+         S +  E T A    G AT  
Sbjct: 856 RGPMTNDDFNPNIEEEASDSAQGRAILKIPSYKPASTPGCSSKNGEPTSAAFAQGFATAA 915

Query: 83  DTMPAPQRTPVRRRGAVSPATSVESMSTSV 112
            +    +R      G  SP  S+   + +V
Sbjct: 916 SSPGLLERASPAFSGTSSPTNSLVGKTVAV 945


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 34 NPTRPSVGKKRGRRKTPLPT 53
          N T P    +R + K PLPT
Sbjct: 19 NVTMPETTPRRKKNKKPLPT 38


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 50  PLPTSDDGGASSSSIEVPEKTMAIEVAGAATTKDTMPAPQRTPVRR 95
           P  +  D        ++  K  A+ ++G +    T P P  TP ++
Sbjct: 348 PSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQK 393


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.123    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,585
Number of Sequences: 429
Number of extensions: 2668
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 251
length of database: 140,377
effective HSP length: 56
effective length of query: 195
effective length of database: 116,353
effective search space: 22688835
effective search space used: 22688835
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)