Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001112-TA|BGIBMGA001112-PA|undefined
(251 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.56
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.56
At5g06350.1 68418.m00711 expressed protein 31 0.98
At3g28790.1 68416.m03593 expressed protein 31 0.98
At3g09710.1 68416.m01150 calmodulin-binding family protein low s... 29 2.3
At2g40070.1 68415.m04923 expressed protein 29 2.3
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi... 29 3.0
At4g28750.1 68417.m04111 photosystem I reaction center subunit I... 29 4.0
At3g22620.1 68416.m02856 protease inhibitor/seed storage/lipid t... 29 4.0
At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26... 29 4.0
At2g19390.1 68415.m02262 expressed protein 29 4.0
At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related... 29 4.0
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 28 5.2
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 28 5.2
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 28 5.2
At2g33330.1 68415.m04085 33 kDa secretory protein-related contai... 28 5.2
At5g45050.2 68418.m05524 disease resistance protein-related simi... 28 6.9
At5g45050.1 68418.m05523 disease resistance protein-related simi... 28 6.9
At5g41920.1 68418.m05104 scarecrow transcription factor family p... 28 6.9
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 6.9
At4g13740.1 68417.m02133 expressed protein 28 6.9
At4g00390.1 68417.m00053 expressed protein contains Pfam profil... 28 6.9
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 28 6.9
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 28 6.9
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ... 27 9.2
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 27 9.2
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P... 27 9.2
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 27 9.2
At1g74160.1 68414.m08589 expressed protein 27 9.2
At1g63700.1 68414.m07209 protein kinase, putative contains prote... 27 9.2
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 6 RRAAEFPSRCSSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIE 65
R + P SS +ST S + PS + R R ++PLP+ G+ S S
Sbjct: 230 RSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKP 289
Query: 66 VPEKT 70
P K+
Sbjct: 290 SPAKS 294
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 6 RRAAEFPSRCSSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIE 65
R + P SS +ST S + PS + R R ++PLP+ G+ S S
Sbjct: 230 RSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKP 289
Query: 66 VPEKT 70
P K+
Sbjct: 290 SPAKS 294
>At5g06350.1 68418.m00711 expressed protein
Length = 890
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 40 VGKKRGRRKTPLPTSDDGGASSSSIEVPEKTMAIEVAGAATTKDTMPAPQRTP 92
+ +K GR+ P + + S +I +PE+++A E +G AT+K + + P
Sbjct: 21 IKRKLGRKLPPPKNATNTEIKSKAIILPEQSVAAEKSGLATSKKGLTLKELLP 73
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 30.7 bits (66), Expect = 0.98
Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 11/191 (5%)
Query: 1 MKEAVRRAAEFPSRCSSIAGSMRSTLTSDSGAT--NPTRPSVGKKRGRRK---TPLPTSD 55
MK+ +E S S + T SG T + T S G G TP ++D
Sbjct: 331 MKKESNSKSESESAASGSVSKTKETNKGSSGDTYKDTTGTSSGSPSGSPSGSPTPSTSTD 390
Query: 56 DGGASSSSIEVPEKTMAIEVAGAATTKDTMPAPQRTPVRRRGAVSPA--TSVESM----S 109
+S S A AGA+ + + A Q+ + + S + TSV+ + S
Sbjct: 391 GKASSKGSASASAGASASASAGASASAEESAASQKKESNSKSSSSSSSTTSVKEVETQTS 450
Query: 110 TSVASLASGDEAFRXXXXXXXXXXXXXSTVAAKGAEPSSSYRKRLREGVAMVRTKLIPTM 169
+ V S S E T + A+ S+S K L G+ +K+ M
Sbjct: 451 SEVNSFISNLEKKYTGNSELKVFFEKLKTSMSASAKLSTSNAKELVTGMRSAASKIAEAM 510
Query: 170 SKLVAQLESRE 180
+ ++ E
Sbjct: 511 MFVSSRFSKSE 521
>At3g09710.1 68416.m01150 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 454
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 21 SMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIEVPEKTMAIEVAGAAT 80
S R+ L S + P+ S + R+K P+P+S +S + E+ +A +
Sbjct: 306 SNRNKLNSSTKPNTPSASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNRRPSIARPSV 365
Query: 81 TKD 83
+ D
Sbjct: 366 SDD 368
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 12 PSRCSSIAGSMRSTLT---SDSGATNPT-RPSVGKKRGRRKTPLPTSDDGGASSSSIEVP 67
PS + AG RST S + ++ PT RP++ + ++ PT ++S++
Sbjct: 272 PSTTTKSAGPSRSTTPLSRSTARSSTPTSRPTLPPSKTISRSSTPTRRPIASASAATTTA 331
Query: 68 EKTMA-IEVAGAATTKDTMPAPQRTPVRRRGA 98
T++ I+ + A K MP P + P R A
Sbjct: 332 NPTISQIKPSSPAPAKP-MPTPSKNPALSRAA 362
>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
similarity to copper homeostasis factor
[GI:3168840][PMID:9701579] and farnesylated proteins
ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
contains PF00403 Heavy-metal-associated domain
Length = 364
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 1 MKEAVRRAAEFPSRCSSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSD---DG 57
+KE E PS + + D+G P VGKK+ ++ L T++ DG
Sbjct: 188 LKEKDSGKEESPSPPADSSAPAAEKKAEDTGGAVPDNGKVGKKKKKKGQSLATTNNPTDG 247
Query: 58 GASSSSIEVPEKT 70
A + S+ P T
Sbjct: 248 PARTQSLPPPTAT 260
>At4g28750.1 68417.m04111 photosystem I reaction center subunit
IV, chloroplast, putative / PSI-E, putative (PSAE1)
identical to SP|Q9S831; similar to SP|P12354
Photosystem I reaction center subunit IV, chloroplast
precursor (PSI-E) {Spinacia oleracea}; contains Pfam
profile PF02427: Photosystem I reaction centre subunit
IV / PsaE
Length = 143
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 5 VRRAAEFPSRCSSIAGSMRSTLTSDSGAT--NPTRPSVGKKRGRR 47
V RAAE P+ SS + + + GAT P P +G KRG +
Sbjct: 42 VVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGSK 86
>At3g22620.1 68416.m02856 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 203
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 27 TSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIEVPEKTMAI 73
T S T P PSV PTSDDGG++S E P A+
Sbjct: 147 TPQSDTTRPFTPSVDGGA-------PTSDDGGSTSRPSETPSSAYAL 186
>At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26569
Histone H1.2 {Arabidopsis thaliana}
Length = 273
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 51 LPTSDDGGASSSSIEVPEKTMAIEVAGAATTKDTMPAPQRTPVRRRGAVSPATS 104
+PT+ D GA+ ++++ PEK A + G + K T + PV+ T+
Sbjct: 8 VPTTVDSGAADTTVKSPEKKPAAK--GGKSKKTTTAKATKKPVKAAAPTKKKTT 59
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 28 SDSGATNPT-RPSVGKKRGRRKTPLPTSDDGGASSSSIEVPEK 69
S G TN RPS+ +G RKT S S+ VPE+
Sbjct: 1089 SSRGGTNKIGRPSLSNAKGERKTKAKPKQKTTQISPSVRVPEQ 1131
>At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related
contains Pfam profile: PF04504 protein of unknown
function, DUF573; similar to storekeeper protein
GI:14268476 [Solanum tuberosum]
Length = 376
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 17 SIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIEVP-----EKTM 71
S +GS T SDS +TNP GK L +D +SS+++ +P K
Sbjct: 71 SDSGSETET-DSDSESTNPPNSGSGKTIALNTVNLKKKEDPTSSSATLALPAMKSGTKRP 129
Query: 72 AIEVAGAATTK 82
A E A +TK
Sbjct: 130 ASEAAATTSTK 140
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 28.3 bits (60), Expect = 5.2
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 16 SSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGG-----ASSSSIEVPEKT 70
+S++ S D PS GKK R TPLP S S SS E P
Sbjct: 44 TSMSASTNRRRLKDINTGAGENPSSGKKPLRSVTPLPISSKNSNPALQKSLSSKENPNPK 103
Query: 71 MAIEVAGAATTKDTMPAPQ--RTPVRRRGAVSPATS 104
++ G+ P P+ ++ V G V+ +TS
Sbjct: 104 LSHRSFGSTQKPVLRPVPRIDKSAVSGEGRVTRSTS 139
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 28.3 bits (60), Expect = 5.2
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 16 SSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGG-----ASSSSIEVPEKT 70
+S++ S D PS GKK R TPLP S S SS E P
Sbjct: 44 TSMSASTNRRRLKDINTGAGENPSSGKKPLRSVTPLPISSKNSNPALQKSLSSKENPNPK 103
Query: 71 MAIEVAGAATTKDTMPAPQ--RTPVRRRGAVSPATS 104
++ G+ P P+ ++ V G V+ +TS
Sbjct: 104 LSHRSFGSTQKPVLRPVPRIDKSAVSGEGRVTRSTS 139
>At3g25500.1 68416.m03171 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 1051
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 54 SDDGGASSSSIEVPEKTMAIEVAGAATTKDTMPAPQRTPVRRRGAVSPATSVESMSTSVA 113
+D SSSS P ++ I ++ + + K + P P ++ V S S S+A
Sbjct: 281 NDTISCSSSSSGSPGRSTFISISPSMSPKRSEPKPPVISTPEPAELTDYRFVRSPSLSLA 340
Query: 114 SLASG 118
SL+SG
Sbjct: 341 SLSSG 345
>At2g33330.1 68415.m04085 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 304
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 46 RRKTPLPTSDDGGASSSSIE--VPEKTMAIEVAGAA 79
+R +P P+S G+SSSS KT+AI V G A
Sbjct: 246 KRSSPYPSSGSSGSSSSSSSSGTTGKTVAIIVGGTA 281
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 11 FPSRCSSIAGSMRSTLTSDSGATNPTRPSVGK-KRGRRKTPLPTS 54
FP+ +++AGS RS+ + S T +V + K G K+ LP+S
Sbjct: 1211 FPTLRNTLAGSTRSSSSKCSDVTTSASSTVSQDKEGPDKSHLPSS 1255
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 11 FPSRCSSIAGSMRSTLTSDSGATNPTRPSVGK-KRGRRKTPLPTS 54
FP+ +++AGS RS+ + S T +V + K G K+ LP+S
Sbjct: 1239 FPTLRNTLAGSTRSSSSKCSDVTTSASSTVSQDKEGPDKSHLPSS 1283
>At5g41920.1 68418.m05104 scarecrow transcription factor family
protein
Length = 405
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 51 LPTSDDGGASSSSIEVPEKTMAIEVAGAATTK 82
LP+SDD ++ IE PE+T +E GAA K
Sbjct: 10 LPSSDDPSSAKRRIEFPEET--LENDGAAAIK 39
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 27 TSDSGATNPTRPSVGKKRGRR-KTPLPTSDDGGASSSSIEVPEKTMAIEVAGAATTKDTM 85
T+ S +P PS+ +P T GG+ S VP G+ T T
Sbjct: 415 TTPSPGGSPPSPSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPPSTTPSPGSPPTSPTT 474
Query: 86 PAPQRTPVRRRGAVSPATSVESMSTS 111
P P +P +P S S T+
Sbjct: 475 PTPGGSPPSSPTTPTPGGSPPSSPTT 500
>At4g13740.1 68417.m02133 expressed protein
Length = 605
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 143 GAEPSSSYRKRLREGVAMVRTKLIPTMSKLVAQLESRESRILEDSPVLREGTPLSPMPAL 202
GA +SS ++R +E V V T ++P + + + + P+ + + +S +
Sbjct: 129 GAFENSSLKRRRQEEVVQV-TDVVPKSNFASGESANNSFSVSLPIPIATDDSGVSRVHGE 187
Query: 203 AHSGPPARKMD 213
SG P RK+D
Sbjct: 188 KSSGKPKRKVD 198
>At4g00390.1 68417.m00053 expressed protein contains Pfam profile:
PF04504 protein of unknown function, DUF573
Length = 364
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 4 AVRRAAEFPSRCSSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSS 63
A ++ + S +GS T SDS +T+P + GK +K P+S + +
Sbjct: 66 APSKSTAVSAAADSDSGSESET-DSDSESTDPPKSGSGKTIASKKKDDPSSSTATLALPA 124
Query: 64 IEVPEKTMAIEVAGAATTK 82
++ K A E A +T +
Sbjct: 125 VKSGAKRAASEAATTSTKR 143
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 16 SSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRK 48
+S+AGS + T+ ++S A PT + G ++ RRK
Sbjct: 693 TSVAGSSKQTMETESVAEKPT--NTGSRKRRRK 723
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
(Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
[Rattus norvegicus]
Length = 1339
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/88 (26%), Positives = 33/88 (37%)
Query: 24 STLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIEVPEKTMAIEVAGAATTKD 83
S + + N T P G G T P S SSSS+ E E + ++
Sbjct: 1227 SLIHASPSMKNSTTPQRGSGSGSSSTAAPDSGYFKGSSSSLYGQEHYTESETGNSRNNEN 1286
Query: 84 TMPAPQRTPVRRRGAVSPATSVESMSTS 111
QR RR G + ++S + S S
Sbjct: 1287 NNNNKQRGSSRRSGPLDYSSSHKGGSGS 1314
>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit (Ath-A), Arabidopsis thaliana
Length = 1084
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 38 PSVGKKRGRRKTPLPTSDDGGASSSSIEVPEKTMAIEVAGAATTKDTM 85
PS+G G R P+ SD A+ VP+K +A+ G+ KD M
Sbjct: 175 PSLGG-HGNRVHPVSLSDPTVAAHPRPMVPQKDLAVYGYGSVAWKDRM 221
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 59 ASSSSIEVPEKTMAIEVAGAATTKDTMPAPQRTPVRRRGAVSPATSVESMSTSVASLA 116
A ++E P K +AIE ++ T AP+ A A ES + A++A
Sbjct: 1155 AKPLALEEPTKPLAIEAPPSSEAPQTESAPETAAAAESPAPETAAVAESPAPGTAAVA 1212
>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 988
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 11 FPSRCSSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSS 62
FPS+ + + + S+ G +PS R R K P ++G +S +
Sbjct: 254 FPSQMQLASKKQKRCVKSNGGRNRKGKPSKNTSRVRTKHQRPVPEEGSSSGT 305
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 9 AEFPSRCSSIAGSMRSTLTSDSGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIEVPE 68
A +P SS++GS +S+ P+V P P G ++S S +
Sbjct: 374 APYPIGSSSLSGSSAPVSSSNEPTKEAVTPAVSSMVSGLSRPEPAETSGDSASVSGSIEA 433
Query: 69 KT 70
KT
Sbjct: 434 KT 435
>At1g74160.1 68414.m08589 expressed protein
Length = 1030
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 54 SDDGGASSSSIEVPEKTMAIEVAGAATTKDTMPAPQRT 91
S+DG +++ S+ E I V A+T ++T P+P +T
Sbjct: 707 SEDGLSANLSLVALEHPSPISVLDASTYRETEPSPVKT 744
>At1g63700.1 68414.m07209 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to MEK kinase
(MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
Length = 883
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 30 SGATNPTRPSVGKKRGRRKTPLPTSDDGGASSSSIEVPEKTMAIEVAGAAT-TKDTMPAP 88
SGA P P G +P DD S + +P ++ + T + T P+
Sbjct: 326 SGAVTPLHPRAGGST--TGSPTRRLDDNRQQSHRLPLPPLLISNTCPFSPTYSAATSPSV 383
Query: 89 QRTPVRRRGAVSPAT 103
R+P R VSP +
Sbjct: 384 PRSPARAEATVSPGS 398
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.123 0.337
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,069,268
Number of Sequences: 28952
Number of extensions: 194270
Number of successful extensions: 613
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 39
length of query: 251
length of database: 12,070,560
effective HSP length: 79
effective length of query: 172
effective length of database: 9,783,352
effective search space: 1682736544
effective search space used: 1682736544
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)
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