GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001111-TA|BGIBMGA001111-PA|IPR013151|Immunoglobulin,
IPR003961|Fibronectin, type III, IPR008957|Fibronectin, type III-like
fold, IPR007110|Immunoglobulin-like
         (249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    27   2.6  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   3.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 111 RCVAGYDGGLHTTYIV-----EVWETGNLIANVSSSVPVWKLGDLGSGKALKL 158
           RCV  Y GGL T+ I+     E WE    +ANV      W   D    KALK+
Sbjct: 7   RCVLAYSGGLDTSCILAWLIEEGWEVICYMANVGQEED-W---DAAREKALKV 55


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 113 VAGYDGGLHTTYIVEVWETGNLIANVSSSVPVWKL 147
           + G  G L TT  +E      L AN   SVP W+L
Sbjct: 377 LVGVVGALSTTPFLEKQYMAKLDANNGKSVPEWRL 411


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5    AAINEPASVKCDVDAFPPPKNFQWTLNNSMGTVDIEPSKF 44
            +++  P  V   +DAF   K F     N MG  D+  +KF
Sbjct: 1533 SSLTSPIPVSVGIDAFNEKKKFDIDSGNDMGLRDLN-TKF 1571


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 8   NEPASVKCDVDAFPPPKNFQWTLNNSMGTVDIEPSKFTVDN 48
           N   S + D +AFPPP +    L +SMG + +  + FT+ N
Sbjct: 240 NRKISSEYDNEAFPPPTSV-ILLGHSMGGI-VAQATFTMKN 278


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,412
Number of Sequences: 5004
Number of extensions: 40845
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 4
length of query: 249
length of database: 2,362,478
effective HSP length: 71
effective length of query: 178
effective length of database: 2,007,194
effective search space: 357280532
effective search space used: 357280532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)