Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001111-TA|BGIBMGA001111-PA|IPR013151|Immunoglobulin,
IPR003961|Fibronectin, type III, IPR008957|Fibronectin, type III-like
fold, IPR007110|Immunoglobulin-like
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0328 - 20303330-20303440,20304123-20304942,20305170-203053... 34 0.12
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 33 0.29
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 33 0.29
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 30 2.0
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 29 2.7
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 29 3.6
10_08_0487 - 18253355-18253408,18255645-18257495 29 4.7
07_03_0240 - 15624922-15625146,15626215-15626222,15626382-15626484 29 4.7
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 28 6.2
01_06_0194 - 27368563-27370956 28 6.2
10_01_0146 - 1719997-1720386,1721498-1721515 28 8.2
08_02_0797 + 21307534-21307639,21307907-21308988,21309385-213094... 28 8.2
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 28 8.2
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 28 8.2
>05_04_0328 -
20303330-20303440,20304123-20304942,20305170-20305368,
20305417-20305954
Length = 555
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 42 SKFTVDNIGRSVLTYTATTESDYGSLTCRATNMAGQQMDPCRYTLLPAVKPDQPFNCTTL 101
++F++D S + YT+ DY S+ G P R+ LL +K +Q C T
Sbjct: 438 ARFSIDTGTDSEMIYTSIANRDYWSVKLLEVIKEGC---PIRHLLLGDIKKEQLLQCETF 494
Query: 102 NLTDDSAE 109
N T + E
Sbjct: 495 NTTQTNTE 502
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 32.7 bits (71), Expect = 0.29
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 11 ASVKCDVDAFPPPKNFQWTLNNSMGTVDIEPSKFTVDNIGRSVLTYTATTESDYGSLTCR 70
AS DV Q +LN+ +GT + P+K V+ A E + S T
Sbjct: 1118 ASHNIDVPTPTVAMGLQVSLNHGIGTTTVTPTKCLVNCFDNDTGVNHAILEESFASTTAA 1177
Query: 71 ATNMAGQQMDPCRYTLLPAVKPDQPFN--CTTLNLTDDSAELRCVAGYDGGLHTTYIV 126
AT D + + + CTT++L D+ ++ + HT ++
Sbjct: 1178 ATMETVVSEDKACSIFINTTDLTKVMHSRCTTISLKDNIGTIQAEVAFPFPFHTLNMI 1235
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 32.7 bits (71), Expect = 0.29
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 11 ASVKCDVDAFPPPKNFQWTLNNSMGTVDIEPSKFTVDNIGRSVLTYTATTESDYGSLTCR 70
AS DV Q +LN+ +GT + P+K V+ A E + S T
Sbjct: 685 ASHNIDVPTPTVAMGLQVSLNHGIGTTTVTPTKCLVNCFDNDTGVNHAILEESFASTTAA 744
Query: 71 ATNMAGQQMDPCRYTLLPAVKPDQPFN--CTTLNLTDDSAELRCVAGYDGGLHTTYIV 126
AT D + + + CTT++L D+ ++ + HT ++
Sbjct: 745 ATMETVVSEDKACSIFINTTDLTKVMHSRCTTISLKDNIGTIQAEVAFPFPFHTLNMI 802
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 29.9 bits (64), Expect = 2.0
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 20 FPPPKNFQWTLNNSMGTVDIEPSKFTVDNIGRS---VLTYTATTESDYGSLTCRATNMAG 76
F P NF+ T+ G D++ + +D+ G S V+TYT T S +
Sbjct: 324 FSPDSNFRQTVVELQGCSDVKMESWKIDSDGESLKRVITYT-TAPSKLVKAVKATEEQSY 382
Query: 77 QQMDPCRYTLLPAVK-PDQPFNCTTLNLTDDSAELRCVAGYDGGLHTTYIVEVW 129
+ D Y++L +V PD P C T T+ + D T+++V W
Sbjct: 383 LKADGNGYSVLLSVSTPDVP--CGTYFRTEILFRILPGPELDSEQLTSHLVISW 434
>04_04_1509 -
34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 124 YIVEVWETGNLIANVSSSVPVWKLGDLGSGKALKLYFYAHNARGRSDITKLRVHTLSRLA 183
+++ WE L A SS+P K D+G+ + +++ AH A SD+ L ++TL+ L
Sbjct: 169 WLIRAWELMYLCA---SSMPPSK--DIGAYLSEYVHYIAHGATTDSDVRVLALNTLNALK 223
Query: 184 LHTEA 188
+A
Sbjct: 224 RSVKA 228
>09_02_0469 -
9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 119 GLHTTYIVEVWETGNLIANVSSSVPVWKLGDLGSGKALKLY 159
G HT + V N +A + S+VP++KL L LK++
Sbjct: 297 GRHTESKIIVTTHSNKVAKLISTVPLYKLAALSEDDCLKIF 337
>10_08_0487 - 18253355-18253408,18255645-18257495
Length = 634
Score = 28.7 bits (61), Expect = 4.7
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 4 GAAINEPASVK-CDVDAFPPPKNFQWTLNN-SMGTVDIEPSKFTVDNIGRSVLTYTATTE 61
GAA N+ VK C D+ F + NN S G+ ++F++D S + Y +
Sbjct: 504 GAAENQNRKVKTCGYDSI-----FDFCENNPSDGSA---AARFSIDIGTDSEMIYASIAN 555
Query: 62 SDYGSLTCRATNMAGQQMDPCRYTLLPAVKPDQPFNCTTLNLTDDSAE 109
DY S+ G P R+ LL +K +Q C T + + E
Sbjct: 556 RDYWSVKLLVVIKEGC---PIRHLLLGDIKKEQLLQCETFSTRQTNTE 600
>07_03_0240 - 15624922-15625146,15626215-15626222,15626382-15626484
Length = 111
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 111 RCVAGYDGGLHTTYIVEVWETGNLIANVSSSVPVWKLGDLGSGKAL 156
R + GGLHT + + VW T ++ ++ + G+LGS + L
Sbjct: 5 RVASVLSGGLHTAWTISVWRTTLILLSIQHNNK--GAGELGSQQGL 48
>10_06_0102 +
10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 22 PPKNFQWTLNNSMGTVDIEPSKFTVDNIGRSVLTYT 57
PPK+ +L N T++IE SK+T++ + R +YT
Sbjct: 575 PPKHI--SLVNLTVTLNIEGSKYTIETVRRGPRSYT 608
>01_06_0194 - 27368563-27370956
Length = 797
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 101 LNLTDDSAELRCVAGYDGGLHTTYIVEVWETGNLIANVSSSVPVWKLGD 149
L LTD + + G HTT V + +TGNL+ SS+ VW+ D
Sbjct: 108 LVLTDTNGTTVWESKTSSGKHTT--VTLLDTGNLVIKDSSNSTVWQSFD 154
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 38 DIEPSKFTVDNIGRSVLTYTATTESDYGSLTCRATNMAGQQMDP 81
D+ PS+ T D+ G ++ A T +D G R + +M P
Sbjct: 40 DVAPSETTADDGGAALRLRPAETTADGGGAALRLLQLRAAEMQP 83
>08_02_0797 +
21307534-21307639,21307907-21308988,21309385-21309432,
21309705-21310217
Length = 582
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 105 DDSAELRCVAGYDGGLHTTYIVEVWETGNLIANVSS 140
D + + R V Y GGL+ + VE W T +++++ +S
Sbjct: 208 DVAGDPRAVPRYPGGLNLQHSVEYWLTLDILSSTTS 243
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 61 ESDYGSLTCRATNMAGQQMDPCRYTLLPAVKPDQPFNCTTLNLTDDSAELRCVAGYDGGL 120
E D+G+LTC TN+A +Q+ R+ L +K C L + + CV DG L
Sbjct: 265 EMDHGTLTCAPTNLAVKQV-ASRF--LKVIKESSDRACLGDVLLCGNKQRMCV---DGNL 318
Query: 121 HTTYI 125
Y+
Sbjct: 319 KEIYL 323
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 150 LGSGKALKLYFYAHNARGRSDITKLRVHTLSRLALHTEAKTTEVQI 195
+GS K+Y +A NA S + +L T ALH T+EV+I
Sbjct: 877 IGSSLEAKVYLHAENANTVSKLKELVSATNDADALHRLFITSEVEI 922
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,530,362
Number of Sequences: 37544
Number of extensions: 289565
Number of successful extensions: 545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 14
length of query: 249
length of database: 14,793,348
effective HSP length: 80
effective length of query: 169
effective length of database: 11,789,828
effective search space: 1992480932
effective search space used: 1992480932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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