GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001111-TA|BGIBMGA001111-PA|IPR013151|Immunoglobulin,
IPR003961|Fibronectin, type III, IPR008957|Fibronectin, type III-like
fold, IPR007110|Immunoglobulin-like
         (249 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31230.1 68417.m04433 protein kinase family protein contains ...    28   5.2  
At2g46420.1 68415.m05777 expressed protein                             28   6.8  
At1g12320.1 68414.m01424 expressed protein                             27   9.0  

>At4g31230.1 68417.m04433 protein kinase family protein contains
           Pfam profiles PF00069: Protein kinase domain, PF00582:
           universal stress protein family
          Length = 764

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/69 (27%), Positives = 30/69 (43%)

Query: 122 TTYIVEVWETGNLIANVSSSVPVWKLGDLGSGKALKLYFYAHNARGRSDITKLRVHTLSR 181
           T Y+    E GNL   +  +V  W + D      L L       + R D++K+ +  L+R
Sbjct: 673 THYVERALEKGNLKDLLDPAVSDWPVEDTTEFAKLALKCAEIRRKDRPDLSKVILPELNR 732

Query: 182 LALHTEAKT 190
           L +  E  T
Sbjct: 733 LRVLAEEST 741


>At2g46420.1 68415.m05777 expressed protein
          Length = 363

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 17  VDAFPPPKNFQWTLNNS-----MGTVDIEPSKFTVDNIGRSVLTYTATTESDYGSLTCRA 71
           V+  P P NFQ    NS     + T   EP+     N G S +  +  + +  G     A
Sbjct: 188 VNGVPAPANFQPMRINSGNDMVIDTTMAEPTPMIPPNSGMSDMPVSPASVASSGHFPFAA 247

Query: 72  TNMAGQQMD 80
           ++M+G  MD
Sbjct: 248 SDMSGMGMD 256


>At1g12320.1 68414.m01424 expressed protein
          Length = 212

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 97  NCTTLNLTDDSAELRCVAGYDGGLHTTYIVEVWETGNLIAN 137
           +C  L  T D+AEL  +A    G +   IVE W  G+ IA+
Sbjct: 20  SCENLE-TPDAAEL--IAAMAAGWNVKLIVETWSEGDAIAS 57


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,853,759
Number of Sequences: 28952
Number of extensions: 219580
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 4
length of query: 249
length of database: 12,070,560
effective HSP length: 79
effective length of query: 170
effective length of database: 9,783,352
effective search space: 1663169840
effective search space used: 1663169840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)