Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001110-TA|BGIBMGA001110-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2
         (178 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal hydrolase-r...    32   0.19 
At4g08630.1 68417.m01420 expressed protein ; expression supporte...    28   4.1  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    27   5.4  
At5g07050.1 68418.m00798 nodulin MtN21 family protein similar to...    27   5.4  
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1...    27   5.4  
At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.1  
At2g26230.1 68415.m03149 uricase / urate oxidase / nodulin 35, p...    27   9.4  

>At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1149

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 30  FRDSEDRNETVSVLRWTPQMGHNGHTLTCRAAHTILDHTTIETSMSLN--LHYVPIVKLR 87
           F +S + N+ +  L+      ++G  L CRA ++ LDHT ++  +  +    ++ + K  
Sbjct: 398 FLESHELNQILDFLKTIKCKRNDGTDLVCRAVNSFLDHTRVKEKIDFDPQFSFLLLDKRL 457

Query: 88  LGSKLNPNDIEEGDDVYFECVVEANPPA 115
           L  K  P D E   +V+      A  PA
Sbjct: 458 LKCKDVPFDDEGTINVFDPNAHYAKAPA 485


>At4g08630.1 68417.m01420 expressed protein ; expression supported
           by MPSS
          Length = 845

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 126 IMAHNQRAGVIAGPAHLALQSVAKEQSGRYSCTASNVEGDGRSSPFNL 173
           +M  + R+G  AGPA  A ++  K  + R +   SN  GD   S  +L
Sbjct: 28  LMHRHTRSGSNAGPASNAKKAQTKAAAQRLAAVMSNQTGDEEDSDEDL 75


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 85  KLRLGSKLNPNDIEEGDDVYFECVVEANP-PAYKVVWEHNGQIMAHNQRAGVI 136
           +L  GS+     +  G    FE +++A+  P   +VW HN   M      G +
Sbjct: 137 RLITGSQSGEFTLWNGQSFNFEMILQAHDQPIRSMVWSHNENYMVSGDDGGTL 189


>At5g07050.1 68418.m00798 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 381

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 108 VVEANPPAYKVVWEHNGQIMAHNQRAGVIAGPAHLALQSVAKEQSGRYSCTA 159
           V+E NP A+++ W+ N    A+   +G++A      +Q +  ++ G    TA
Sbjct: 228 VMEHNPSAWRIGWDMNLLAAAY---SGIVASSISYYVQGIVMKKRGPVFATA 276


>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
           similar to 26S proteasome ATPase subunit GI:1395190 from
           [Spinacia oleracea]
          Length = 426

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 48  QMGHNGHTLTCRAAHTILDHTTIETSMSLNLHYVPIVKLRLGSKLNPNDIEEG 100
           QM      L       I+   T +    +N+  +    + LG K++P DIEEG
Sbjct: 78  QMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEG 130


>At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 23  KGVLNDDFRDSEDRNET-VSVLRWTPQMGHNGHTLTCRAAHTILDHTTIETSMSLNLHYV 81
           KG L + F +   R+E  + V +W PQ+    H  TC      L H    + +    H V
Sbjct: 334 KGYLPEGFEERITRSERGLLVKKWAPQVDILSHKATC----VFLSHCGWNSILESLSHGV 389

Query: 82  PIV 84
           P++
Sbjct: 390 PLL 392


>At2g26230.1 68415.m03149 uricase / urate oxidase / nodulin 35,
           putative identical to uricase SP:O04420 from
           [Arabidopsis thaliana]
          Length = 309

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 66  DHTTIETSMSLNLHYVPIVKLRLGSKLNPNDIEEGDDVY 104
           D ++I   M  N+H++P+    L +K NP+ ++  DDVY
Sbjct: 254 DVSSIHLKMP-NIHFLPV---NLSTKENPSMVKFKDDVY 288


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,385,145
Number of Sequences: 28952
Number of extensions: 169149
Number of successful extensions: 401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 7
length of query: 178
length of database: 12,070,560
effective HSP length: 77
effective length of query: 101
effective length of database: 9,841,256
effective search space: 993966856
effective search space used: 993966856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)