GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001110-TA|BGIBMGA001110-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2
         (178 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    38   6e-05
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.4  
AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    21   5.8  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   5.8  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   5.8  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   5.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 37.5 bits (83), Expect = 6e-05
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 93  NPNDIEEGDDVYFECVVEANPPAYKVVWEHNGQIMAHNQRAGV-----IAGP--AHLALQ 145
           N   ++ G+ V+ +C+   NP   ++ WE  G+ +++++R  +     + G   +HL + 
Sbjct: 421 NEETVQPGNSVFLKCIASGNPTP-EITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNIT 479

Query: 146 SVAKEQSGRYSCTASNVEGDGRSS 169
           ++     G Y C AS+  G    S
Sbjct: 480 AIHTNDGGLYRCVASSKVGSADHS 503



 Score = 35.5 bits (78), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 95  NDIEEGDDVYFECVVEANPPAYKVVWEHNGQIMAHNQRAGVIAGPAH-----LALQSVAK 149
           + I EGD V  +C V        + W  NG  +  +Q  G++   A      L++ +V  
Sbjct: 613 DSINEGDGVSVQCTVSKGDYPLNISWTLNGHFI--DQTNGIVINRASKRVSTLSIDNVQS 670

Query: 150 EQSGRYSCTASN 161
              G Y+C ASN
Sbjct: 671 THVGNYTCLASN 682



 Score = 33.5 bits (73), Expect = 0.001
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 38  ETVSVLRWTPQMGHNGHTLTCRAAHTILDHTTIETSMSLNLHYVPIVKLRLGSKLNPNDI 97
           + VS L  T    ++G    C A+  +    + + S  +N++ +P V+      +    I
Sbjct: 471 DVVSHLNITAIHTNDGGLYRCVASSKV---GSADHSARINVYGLPFVR-----SMEKQAI 522

Query: 98  EEGDDVYFECVVEANPPAYKVVWEHNGQIMAHNQRAGVIAGPAHLALQSVAK-EQSGRYS 156
             G  +   C   A  P   VVWE +G+ +  N++  V      L +++V +      Y 
Sbjct: 523 VAGGTLIVHCPF-AGHPVDSVVWERDGRQLPINRKQKVFIN-GTLIIENVERASDQATYD 580

Query: 157 CTASNVEGDGRSSPFNLQVI 176
           C A N +G        +QV+
Sbjct: 581 CVAKNSQGYSARGSLEVQVM 600



 Score = 25.0 bits (52), Expect = 0.35
 Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 19/136 (13%)

Query: 48  QMGHNGHTLTCRAAHTILDHTTIETSMSLNLHYVPIVKLRLGSKLNPND--IEEGDDVYF 105
           Q  H G+  TC A+++    TT  TS+ +N   VP   +     L P D    +G D   
Sbjct: 669 QSTHVGN-YTCLASNSA-SVTTYTTSLFIN---VPPRWI-----LEPTDKAFAQGSDAAV 718

Query: 106 ECVVEANPPAYKVVWEHNGQIMAHNQRAGVIAGP------AHLALQSVAKEQSGRYSCTA 159
           EC  +  P    V W+    +   + +      P        L + ++ K   G Y C A
Sbjct: 719 ECKADGFPRPV-VTWKRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTNEGYYLCEA 777

Query: 160 SNVEGDGRSSPFNLQV 175
            N  G G S+   + V
Sbjct: 778 VNGIGSGLSAVIQISV 793



 Score = 25.0 bits (52), Expect = 0.35
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 101  DDVYFECVVEANPPAYKVVWEHNGQIMAHNQRAGVIAGPAHLALQSVAKEQSGRYSCTAS 160
            +DV   C+    PP   + W+  G     + +         L ++ V++  +G YSC   
Sbjct: 1322 EDVTLPCLAVGLPPPV-ITWKIKGVQFTTSDKIRQ-QPDGSLFIRDVSRNNAGEYSCHVE 1379

Query: 161  NVEG 164
            N  G
Sbjct: 1380 NDYG 1383



 Score = 24.6 bits (51), Expect = 0.47
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 125 QIMAHNQRAGVIAGPAHLALQSVAKEQSGRYSCTASNVEG 164
           Q +  N R   +AG   L ++    E SG+Y C  +N  G
Sbjct: 277 QAVTLNDRVKQVAGT--LIIREAKVEDSGKYLCVVNNSVG 314


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 116 YKVVWEHNGQIMAHNQRAGVIAGPAHLALQSVAKEQSGRYSCTASN 161
           Y ++   NG  + +N +AG+ + P     +  + E+  ++ C   N
Sbjct: 133 YNMITCPNG--LVYNDKAGICSWPDEAKKKGCSSEEVFQFECPKVN 176


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 109  VEANPPAYKVVWEHNGQIMAHNQRAGVIAGPAHLALQSVAKEQS 152
            ++  PP+ + V E   +       + V+  P H   QS+   +S
Sbjct: 1778 IDEEPPSVEAVEEEREEAPPSVHSSTVVPPPQHSTTQSLVDPKS 1821


>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 92  LNPNDIEEGDDVYFEC 107
           L P++ +EGD +  EC
Sbjct: 5   LRPSEAQEGDQLSEEC 20


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 92  LNPNDIEEGDDVYFEC 107
           L P++ +EGD +  EC
Sbjct: 5   LRPSEAQEGDQLSEEC 20


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 92  LNPNDIEEGDDVYFEC 107
           L P++ +EGD +  EC
Sbjct: 5   LRPSEAQEGDQLSEEC 20


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 8   SSQLAKEAIQKVLVYKGVLNDDFRDSEDRNETV-SVLR 44
           S+QL++EA     V  GV   D  + E+RN  V SVL+
Sbjct: 297 SNQLSREAKVTKTVLLGV-KIDICNEEERNSVVASVLQ 333


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,331
Number of Sequences: 317
Number of extensions: 1707
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 178
length of database: 114,650
effective HSP length: 53
effective length of query: 125
effective length of database: 97,849
effective search space: 12231125
effective search space used: 12231125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)