GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001110-TA|BGIBMGA001110-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    25   4.9  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    25   6.5  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   8.5  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    25   8.5  

>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 76  LNLHYVPIVKLRLGSKLNPNDIEEG 100
           +NL  +    + LG +++P DIEEG
Sbjct: 117 INLKQIAKFVVSLGERVSPTDIEEG 141


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 105 FECVVEANPPAYKVVWEHNGQIMAHNQRAGVIA--GPAH 141
           FE VVEAN     + +E+ G   AH    G+ A  GP H
Sbjct: 291 FENVVEANTLMSGLGFENGGLAAAHAIHNGMTAIHGPVH 329


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 102 DVYFECVVEANPPAYKVVWEHNGQIMAHNQRAGVIAGPAHL 142
           D+YFE  V+      K   + N   + +   AGV+   A L
Sbjct: 87  DIYFEVNVDGTANIIKACQKFNVDALVYTSSAGVVFNGADL 127


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 7   DSSQLAKEAIQKVLVYKGVLNDDFRDSEDRNETVSVLRW 45
           D S +  + +   +  K  +NDDF   ED  E + + R+
Sbjct: 142 DLSWIPVDTVTTRIAEKSSMNDDFHKEEDVFENLDINRY 180


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,511
Number of Sequences: 5004
Number of extensions: 32223
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 4
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)