GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001110-TA|BGIBMGA001110-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352...    31   0.52 
10_06_0187 - 11598240-11599508                                         29   1.6  
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917...    28   4.9  
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467...    27   6.5  
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349...    27   6.5  
11_01_0239 - 1842576-1842741,1843264-1843379,1843667-1843738,184...    27   8.5  

>01_06_1448 -
           37434159-37434242,37434875-37434968,37435077-37435250,
           37435536-37435627,37435947-37436056,37437274-37437349,
           37437445-37437537,37437617-37437817
          Length = 307

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 45  WTPQMGHNGHTLTCRAAHTILDHTTIETSMSLNLHYVPIVKLRLGSKLNPNDIEEGDDVY 104
           ++P + +  + +     +   D  +++  M  NLH++P+    LG+K NP  ++  DDVY
Sbjct: 231 YSPSVQNTLYLMAKEVLNRFPDIASVQLRMP-NLHFIPV---NLGNKENPGLVKFADDVY 286


>10_06_0187 - 11598240-11599508
          Length = 422

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 6   LDSSQLAKEAIQKVLVYKGVLNDDFRDSEDRNETVSVLRWTPQM 49
           +D ++L K  ++K L  +G+LN +  +S+D +   S+   TP +
Sbjct: 145 IDEAKLRKSKLEKKLKQRGLLNKESEESDDEDNYFSI-ELTPSL 187


>01_05_0749 +
           24890944-24891146,24891414-24891535,24891633-24891721,
           24891813-24891848,24892268-24892367,24892524-24892566,
           24892645-24892739,24892978-24893036,24893114-24893613,
           24893691-24893772,24893864-24894429,24894520-24894655,
           24894750-24894812,24894942-24895172,24895282-24895395
          Length = 812

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 96  DIEEGDDVYFECVVEANPPAYKVVWE 121
           DIEE     F C++E  PP  KV+ E
Sbjct: 308 DIEESVCALFPCILETKPPKDKVLLE 333


>06_01_0646 +
           4678422-4678508,4679042-4679123,4679236-4679327,
           4679441-4679518,4679635-4679696,4680272-4680993,
           4681115-4681272
          Length = 426

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 48  QMGHNGHTLTCRAAHTILDHTTIETSMSLNLHYVPIVKLRLGSKLNPNDIEEG 100
           QM      L       I+   T +    +N+  +    + LG K++P DIEEG
Sbjct: 78  QMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEG 130


>02_05_0986 -
           33334205-33334362,33334487-33334662,33334774-33334955,
           33335064-33335282,33335407-33335551,33336127-33336188,
           33336282-33336359,33336517-33336608,33337086-33337167,
           33337519-33337605
          Length = 426

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 48  QMGHNGHTLTCRAAHTILDHTTIETSMSLNLHYVPIVKLRLGSKLNPNDIEEG 100
           QM      L       I+   T +    +N+  +    + LG K++P DIEEG
Sbjct: 78  QMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEG 130


>11_01_0239 -
           1842576-1842741,1843264-1843379,1843667-1843738,
           1844057-1844143,1844479-1844582,1845250-1845307,
           1845582-1845630,1846252-1846577,1846645-1846785
          Length = 372

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 154 RYSCTASNVEGDGRSSPFNLQVIC 177
           R+ C A   EGDG S+ +++  +C
Sbjct: 112 RFDCRAFAAEGDGGSADYDVTAVC 135


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,452,248
Number of Sequences: 37544
Number of extensions: 210010
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 7
length of query: 178
length of database: 14,793,348
effective HSP length: 78
effective length of query: 100
effective length of database: 11,864,916
effective search space: 1186491600
effective search space used: 1186491600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)