Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001109-TA|BGIBMGA001109-PA|undefined
         (66 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    29   0.058
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   1.6  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    23   6.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    23   6.6  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    23   6.6  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    23   6.6  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    22   8.7  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    22   8.7  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    22   8.7  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    22   8.7  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 29.5 bits (63), Expect = 0.058
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 9   HMLKVIHLRYLITVPETNFRLIQNKTDD 36
           H+L ++H  +  TVPE    ++Q+KT D
Sbjct: 350 HLLNILHSIFEYTVPEAIDNIVQSKTSD 377


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 10  MLKVIHLRYLITVPETNFRLIQNKTDDDTVNVIC----AAEGAFPAPNLTLATPERYN 63
           +L+++H   L ++PE    L     +  T +++C      E   PA  +  A P  Y+
Sbjct: 340 VLQLLHEHGLASIPELKHELYMAYIERKTTSLVCLYLLGVESLAPALRIPTALPPVYS 397


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 22  VPETNFRLIQNKTDDDTVNVICAAEGAFPAPNLTLATPERY 62
           +P +  + ++   + D  N++  AEG +      +A+ E Y
Sbjct: 218 IPRSFLKNVERPAEGDAANIMINAEGDYVVVQPDVASWETY 258


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 17  RYLITVPETNFRLIQNKTDDDTVNVICAAEGAFPAPN 53
           ++ I V ++  RL  NK +D ++ +       F +PN
Sbjct: 884 QHFICVKDSIKRLGDNKFEDKSLRICTIPNSIFDSPN 920


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
          Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 18 YLITVPETNFRLIQNKTDDDTVNV 41
          Y++T P T  RL++N +     NV
Sbjct: 31 YIVTSPSTGKRLVKNASIKGLYNV 54


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 8   HHMLKVIHLRYLITVPETNFRLIQNKTDDDTVNVIC 43
           HH  K  HL+ L  +   +  + +  TD D ++++C
Sbjct: 188 HH--KHQHLQLLAMILNQSLPMDEISTDSDQISILC 221


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 13  VIHLRYLITVPETNFRLIQNKTDDDTVNVICAAEGAFP 50
           +I +  ++ +PE+   LIQ   D++ V V+  +   FP
Sbjct: 194 IITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFP 231


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 10  MLKVIHLRYLITVPETNFRLIQNKTD 35
           +L VIH+ + + +  +N+R  + K D
Sbjct: 530 ILGVIHMTFCLFLSLSNYRFFKRKLD 555


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 33  KTDDDTVNVICAAEGAF 49
           KTDDD  N + +AE  F
Sbjct: 119 KTDDDVKNKMISAEAPF 135


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 27  FRLIQNKTDDDTVNV 41
           F +++N +DDDT  +
Sbjct: 246 FEMVENNSDDDTFQI 260


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,917
Number of Sequences: 5004
Number of extensions: 11821
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 10
length of query: 66
length of database: 2,362,478
effective HSP length: 46
effective length of query: 20
effective length of database: 2,132,294
effective search space: 42645880
effective search space used: 42645880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)