Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001109-TA|BGIBMGA001109-PA|undefined
         (66 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   0.96 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   1.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   1.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    19   3.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   5.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   6.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   6.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    19   6.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    19   6.7  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    18   8.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 0.96
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 20 ITVPETNFRLIQNKTDDDTVNVICAAEG 47
          +T+PET  R  +NK    T  V C   G
Sbjct: 20 VTMPETTPRRKKNKKPLPTECVFCRNNG 47


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 2   YNCGLEHHMLKVIHLRYLITVPETNFRLIQNKTDDDTVNVIC 43
           Y   L + M K+I+  +     + NFR++    DD   N  C
Sbjct: 380 YMLALSNRMQKIINNDFNFN--DVNFRILGANVDDLMRNTRC 419


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 24  ETNFRLIQNKTDDDTVNVICA 44
           E NFR++    +D  +N  CA
Sbjct: 564 EVNFRILGANVNDLIMNTRCA 584


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 19.4 bits (38), Expect = 3.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 49  FPAPNLTLATPERYNL 64
           +P+P     TPE  NL
Sbjct: 131 YPSPEWDTVTPEAKNL 146


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein
          protein.
          Length = 471

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 23 PETNFRLIQNKT 34
          PE N  L++N+T
Sbjct: 32 PEANVNLLKNRT 43


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 40  NVICAAEGAFPAPNLT 55
           +++C   G FP  +LT
Sbjct: 336 HMLCIGYGRFPPQSLT 351


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 40  NVICAAEGAFPAPNLT 55
           +++C   G FP  +LT
Sbjct: 304 HMLCIGYGRFPPQSLT 319


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 37 DTVNVICAAEGAFPAPNL 54
          DTV ++C+ +  F   +L
Sbjct: 20 DTVAILCSQKAGFDLSDL 37


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding
          protein ASP4 protein.
          Length = 136

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 37 DTVNVICAAEGAFPAPNL 54
          DTV ++C+ +  F   +L
Sbjct: 20 DTVAILCSQKAGFDLSDL 37


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor
          protein.
          Length = 53

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 42 ICAAEGAFPAPNL 54
          ICAA    P PN+
Sbjct: 14 ICAAFAYVPLPNV 26


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,945
Number of Sequences: 429
Number of extensions: 879
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 66
length of database: 140,377
effective HSP length: 44
effective length of query: 22
effective length of database: 121,501
effective search space:  2673022
effective search space used:  2673022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)