GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001109-TA|BGIBMGA001109-PA|undefined
         (66 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36...    26   3.3  
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797           26   3.3  
06_01_0220 - 1673657-1675765                                           26   4.3  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    25   5.7  
10_08_0055 - 14505747-14506934                                         25   7.6  

>08_01_0052 +
           361505-361969,362270-362348,362816-362880,363069-363236,
           363731-364171
          Length = 405

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 7   EHHMLKVIHLRYLITVPETNFRLIQNKTDDDTVNVICAAE-GAFPA 51
           EH  +K   LR   T P++ F  +  K ++   NVI   E G+ P+
Sbjct: 213 EHFPIKRAPLRVRFTAPKSKFASLTEKLEEWNANVISKDESGSQPS 258


>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
          Length = 918

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 6   LEHHMLKVIHLRYLITVPETNFRLIQNKTDDD 37
           L+ H   V H++ + T  E   RL QN+T DD
Sbjct: 285 LKQHENSVEHIKNMNTWNELRLRLSQNQTIDD 316


>06_01_0220 - 1673657-1675765
          Length = 702

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 16  LRYLITVPETNFRLIQNKTDDDTVNVICAAEGAFP 50
           LR +   PE  F +++ +TD  T   +  A GA P
Sbjct: 622 LRSMQHEPEVMFEVLKQRTDGATAAALARAFGAMP 656


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 5   GLEH-HMLKVIHLRYLITVPETNFRLIQNKTDD 36
           GL H H L +++ +Y IT PE   R+I  +  D
Sbjct: 608 GLPHAHFLLIMNEKYKITCPEQYDRIISAELPD 640


>10_08_0055 - 14505747-14506934
          Length = 395

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 18  YLITVPETN-FRLIQNKTDDDTVNVICAAEGAFPAPNLTLATPERYNL 64
           Y  T+PETN   L + + DDD       A+ A    +L +A  +RYNL
Sbjct: 259 YTDTLPETNPQELEEEEEDDDDDYEDDQAQAAAMVEHLLIAA-DRYNL 305


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,103
Number of Sequences: 37544
Number of extensions: 71361
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 14,793,348
effective HSP length: 46
effective length of query: 20
effective length of database: 13,066,324
effective search space: 261326480
effective search space used: 261326480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)